Hb_118777_010

Information

Type -
Description -
Location Contig118777: 1203-2177
Sequence    

Annotation

kegg
ID rcu:RCOM_1429080
description leucine-rich repeat-containing protein, putative
nr
ID XP_002512273.1
description leucine-rich repeat-containing protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9REV4
description Leucine-rich repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1429080 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_118777_010 0.0 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
2 Hb_003636_010 0.0854669428 - - hypothetical protein CISIN_1g037850mg, partial [Citrus sinensis]
3 Hb_003117_060 0.0967717234 - - PREDICTED: cytochrome P450 83B1-like [Jatropha curcas]
4 Hb_152718_010 0.0989165919 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
5 Hb_001363_030 0.1065973539 - - PREDICTED: UDP-glycosyltransferase 74F2-like [Populus euphratica]
6 Hb_106969_010 0.1067331139 - - Cytochrome P450 76C4 [Glycine soja]
7 Hb_000070_140 0.1147593931 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
8 Hb_001009_110 0.1176692001 - - PREDICTED: uncharacterized protein LOC105640232 [Jatropha curcas]
9 Hb_005054_300 0.1207385904 - - aquaporin [Hevea brasiliensis]
10 Hb_011791_010 0.1277659268 - - PREDICTED: cytochrome P450 83B1-like [Jatropha curcas]
11 Hb_012268_010 0.1296721256 - - glutamic acid-rich protein [Manihot esculenta]
12 Hb_000333_130 0.1302805182 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
13 Hb_018563_040 0.130756298 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
14 Hb_000535_030 0.1326098187 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
15 Hb_002294_010 0.1329441858 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
16 Hb_000512_080 0.1337957182 - - ankyrin repeat-containing protein, putative [Ricinus communis]
17 Hb_001454_160 0.135806733 - - PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]
18 Hb_002219_090 0.1371019866 - - protein kinase atmrk1, putative [Ricinus communis]
19 Hb_000345_190 0.1410857149 transcription factor TF Family: C2H2 hypothetical protein POPTR_0005s02730g [Populus trichocarpa]
20 Hb_007666_040 0.1423645629 - - PREDICTED: ent-kaur-16-ene synthase, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_118777_010 Hb_118777_010 Hb_003636_010 Hb_003636_010 Hb_118777_010--Hb_003636_010 Hb_003117_060 Hb_003117_060 Hb_118777_010--Hb_003117_060 Hb_152718_010 Hb_152718_010 Hb_118777_010--Hb_152718_010 Hb_001363_030 Hb_001363_030 Hb_118777_010--Hb_001363_030 Hb_106969_010 Hb_106969_010 Hb_118777_010--Hb_106969_010 Hb_000070_140 Hb_000070_140 Hb_118777_010--Hb_000070_140 Hb_003636_010--Hb_003117_060 Hb_003636_010--Hb_000070_140 Hb_000512_080 Hb_000512_080 Hb_003636_010--Hb_000512_080 Hb_003636_010--Hb_106969_010 Hb_079955_010 Hb_079955_010 Hb_003636_010--Hb_079955_010 Hb_007666_040 Hb_007666_040 Hb_003117_060--Hb_007666_040 Hb_000535_030 Hb_000535_030 Hb_003117_060--Hb_000535_030 Hb_003385_090 Hb_003385_090 Hb_003117_060--Hb_003385_090 Hb_003117_060--Hb_106969_010 Hb_005333_100 Hb_005333_100 Hb_152718_010--Hb_005333_100 Hb_000489_020 Hb_000489_020 Hb_152718_010--Hb_000489_020 Hb_000976_060 Hb_000976_060 Hb_152718_010--Hb_000976_060 Hb_000265_020 Hb_000265_020 Hb_152718_010--Hb_000265_020 Hb_001769_030 Hb_001769_030 Hb_152718_010--Hb_001769_030 Hb_001365_040 Hb_001365_040 Hb_001363_030--Hb_001365_040 Hb_000003_620 Hb_000003_620 Hb_001363_030--Hb_000003_620 Hb_009778_030 Hb_009778_030 Hb_001363_030--Hb_009778_030 Hb_004970_130 Hb_004970_130 Hb_001363_030--Hb_004970_130 Hb_000111_130 Hb_000111_130 Hb_001363_030--Hb_000111_130 Hb_011909_030 Hb_011909_030 Hb_106969_010--Hb_011909_030 Hb_001838_010 Hb_001838_010 Hb_106969_010--Hb_001838_010 Hb_000333_130 Hb_000333_130 Hb_106969_010--Hb_000333_130 Hb_000345_190 Hb_000345_190 Hb_106969_010--Hb_000345_190 Hb_002294_010 Hb_002294_010 Hb_000070_140--Hb_002294_010 Hb_012268_010 Hb_012268_010 Hb_000070_140--Hb_012268_010 Hb_012553_010 Hb_012553_010 Hb_000070_140--Hb_012553_010 Hb_005588_020 Hb_005588_020 Hb_000070_140--Hb_005588_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 44.5327 3.16518 2.18283 0.0320211 0.0282235
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0577533 0.207668 20.4313 2.41847

CAGE analysis