Hb_003636_010

Information

Type -
Description -
Location Contig3636: 6230-7429
Sequence    

Annotation

kegg
ID cic:CICLE_v10021347mg
description hypothetical protein
nr
ID KDO51720.1
description hypothetical protein CISIN_1g037850mg, partial [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067ECY8
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g037850mg PE=4 SV=1
Gene Ontology
ID GO:0000166
description serine threonine-protein kinase-like protein ccr3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003636_010 0.0 - - hypothetical protein CISIN_1g037850mg, partial [Citrus sinensis]
2 Hb_118777_010 0.0854669428 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
3 Hb_003117_060 0.0899405823 - - PREDICTED: cytochrome P450 83B1-like [Jatropha curcas]
4 Hb_000070_140 0.0904273997 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
5 Hb_000512_080 0.0974876919 - - ankyrin repeat-containing protein, putative [Ricinus communis]
6 Hb_106969_010 0.1088618707 - - Cytochrome P450 76C4 [Glycine soja]
7 Hb_079955_010 0.1090486237 transcription factor TF Family: MYB-related PREDICTED: myb-related protein Myb4-like [Populus euphratica]
8 Hb_012268_010 0.1118759843 - - glutamic acid-rich protein [Manihot esculenta]
9 Hb_005054_300 0.1253594535 - - aquaporin [Hevea brasiliensis]
10 Hb_000535_030 0.1259877144 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
11 Hb_151281_010 0.1319801551 - - PREDICTED: LOW QUALITY PROTEIN: probable L-type lectin-domain containing receptor kinase S.5 [Jatropha curcas]
12 Hb_011791_010 0.131988841 - - PREDICTED: cytochrome P450 83B1-like [Jatropha curcas]
13 Hb_000322_200 0.1323993502 transcription factor TF Family: bHLH PREDICTED: putative transcription factor bHLH041 [Jatropha curcas]
14 Hb_003090_060 0.1332314157 - - PAR1 protein [Theobroma cacao]
15 Hb_002294_010 0.1366332945 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
16 Hb_152718_010 0.1368957989 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Jatropha curcas]
17 Hb_166257_010 0.142234473 - - hypothetical protein JCGZ_21808 [Jatropha curcas]
18 Hb_000345_190 0.143320367 transcription factor TF Family: C2H2 hypothetical protein POPTR_0005s02730g [Populus trichocarpa]
19 Hb_000333_130 0.1443531754 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
20 Hb_001514_100 0.1456421685 - - PREDICTED: F-box protein GID2 [Jatropha curcas]

Gene co-expression network

sample Hb_003636_010 Hb_003636_010 Hb_118777_010 Hb_118777_010 Hb_003636_010--Hb_118777_010 Hb_003117_060 Hb_003117_060 Hb_003636_010--Hb_003117_060 Hb_000070_140 Hb_000070_140 Hb_003636_010--Hb_000070_140 Hb_000512_080 Hb_000512_080 Hb_003636_010--Hb_000512_080 Hb_106969_010 Hb_106969_010 Hb_003636_010--Hb_106969_010 Hb_079955_010 Hb_079955_010 Hb_003636_010--Hb_079955_010 Hb_118777_010--Hb_003117_060 Hb_152718_010 Hb_152718_010 Hb_118777_010--Hb_152718_010 Hb_001363_030 Hb_001363_030 Hb_118777_010--Hb_001363_030 Hb_118777_010--Hb_106969_010 Hb_118777_010--Hb_000070_140 Hb_007666_040 Hb_007666_040 Hb_003117_060--Hb_007666_040 Hb_000535_030 Hb_000535_030 Hb_003117_060--Hb_000535_030 Hb_003385_090 Hb_003385_090 Hb_003117_060--Hb_003385_090 Hb_003117_060--Hb_106969_010 Hb_002294_010 Hb_002294_010 Hb_000070_140--Hb_002294_010 Hb_012268_010 Hb_012268_010 Hb_000070_140--Hb_012268_010 Hb_012553_010 Hb_012553_010 Hb_000070_140--Hb_012553_010 Hb_005588_020 Hb_005588_020 Hb_000070_140--Hb_005588_020 Hb_000223_050 Hb_000223_050 Hb_000512_080--Hb_000223_050 Hb_000512_080--Hb_152718_010 Hb_001514_100 Hb_001514_100 Hb_000512_080--Hb_001514_100 Hb_000265_020 Hb_000265_020 Hb_000512_080--Hb_000265_020 Hb_002085_070 Hb_002085_070 Hb_000512_080--Hb_002085_070 Hb_011909_030 Hb_011909_030 Hb_106969_010--Hb_011909_030 Hb_001838_010 Hb_001838_010 Hb_106969_010--Hb_001838_010 Hb_000333_130 Hb_000333_130 Hb_106969_010--Hb_000333_130 Hb_000345_190 Hb_000345_190 Hb_106969_010--Hb_000345_190 Hb_151281_010 Hb_151281_010 Hb_079955_010--Hb_151281_010 Hb_003090_060 Hb_003090_060 Hb_079955_010--Hb_003090_060 Hb_002621_030 Hb_002621_030 Hb_079955_010--Hb_002621_030 Hb_131591_010 Hb_131591_010 Hb_079955_010--Hb_131591_010 Hb_011791_010 Hb_011791_010 Hb_079955_010--Hb_011791_010 Hb_111985_060 Hb_111985_060 Hb_079955_010--Hb_111985_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 9.18563 0.885539 0.420659 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 4.16648 0.165994

CAGE analysis