Hb_002621_030

Information

Type -
Description -
Location Contig2621: 30414-36861
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa002309mg
description hypothetical protein
nr
ID KDO75602.1
description hypothetical protein CISIN_1g006155mg [Citrus sinensis]
swissprot
ID Q8S9L6
description Cysteine-rich receptor-like protein kinase 29 OS=Arabidopsis thaliana GN=CRK29 PE=2 SV=1
trembl
ID A0A067GJK2
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g006155mg PE=3 SV=1
Gene Ontology
ID GO:0004672
description cysteine-rich receptor-like protein kinase 29

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27413: 30562-30948
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002621_030 0.0 - - hypothetical protein CISIN_1g006155mg [Citrus sinensis]
2 Hb_003090_060 0.0629455653 - - PAR1 protein [Theobroma cacao]
3 Hb_079955_010 0.0794371355 transcription factor TF Family: MYB-related PREDICTED: myb-related protein Myb4-like [Populus euphratica]
4 Hb_131591_010 0.0844484422 - - PREDICTED: cytochrome P450 83B1-like [Jatropha curcas]
5 Hb_000676_030 0.0919017508 - - PREDICTED: probable mitochondrial chaperone BCS1-B [Jatropha curcas]
6 Hb_151281_010 0.0929043256 - - PREDICTED: LOW QUALITY PROTEIN: probable L-type lectin-domain containing receptor kinase S.5 [Jatropha curcas]
7 Hb_111985_060 0.0963599112 - - PREDICTED: cytokinin dehydrogenase 5 [Jatropha curcas]
8 Hb_002219_090 0.1147569171 - - protein kinase atmrk1, putative [Ricinus communis]
9 Hb_011791_010 0.1154734176 - - PREDICTED: cytochrome P450 83B1-like [Jatropha curcas]
10 Hb_001073_060 0.1247819647 - - phosphate transporter 1 [Hevea brasiliensis]
11 Hb_002410_010 0.1260188948 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
12 Hb_020648_020 0.1357356689 - - xenotropic and polytropic murine leukemia virus receptor pho1, putative [Ricinus communis]
13 Hb_149056_010 0.1388056753 - - hypothetical protein CICLE_v10016664mg [Citrus clementina]
14 Hb_157980_010 0.1391579426 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
15 Hb_005054_300 0.1402369795 - - aquaporin [Hevea brasiliensis]
16 Hb_000856_240 0.1408543336 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
17 Hb_006634_080 0.1409094558 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-3b [Jatropha curcas]
18 Hb_001691_190 0.1428465642 - - conserved hypothetical protein [Ricinus communis]
19 Hb_005000_200 0.1435423187 - - PREDICTED: uncharacterized protein LOC105637887 [Jatropha curcas]
20 Hb_000338_030 0.1438696807 transcription factor TF Family: HB hypothetical protein JCGZ_21254 [Jatropha curcas]

Gene co-expression network

sample Hb_002621_030 Hb_002621_030 Hb_003090_060 Hb_003090_060 Hb_002621_030--Hb_003090_060 Hb_079955_010 Hb_079955_010 Hb_002621_030--Hb_079955_010 Hb_131591_010 Hb_131591_010 Hb_002621_030--Hb_131591_010 Hb_000676_030 Hb_000676_030 Hb_002621_030--Hb_000676_030 Hb_151281_010 Hb_151281_010 Hb_002621_030--Hb_151281_010 Hb_111985_060 Hb_111985_060 Hb_002621_030--Hb_111985_060 Hb_003090_060--Hb_111985_060 Hb_003090_060--Hb_079955_010 Hb_005054_300 Hb_005054_300 Hb_003090_060--Hb_005054_300 Hb_003090_060--Hb_151281_010 Hb_004931_050 Hb_004931_050 Hb_003090_060--Hb_004931_050 Hb_079955_010--Hb_151281_010 Hb_079955_010--Hb_131591_010 Hb_011791_010 Hb_011791_010 Hb_079955_010--Hb_011791_010 Hb_079955_010--Hb_111985_060 Hb_131591_010--Hb_151281_010 Hb_001691_190 Hb_001691_190 Hb_131591_010--Hb_001691_190 Hb_131591_010--Hb_000676_030 Hb_131591_010--Hb_003090_060 Hb_000676_030--Hb_011791_010 Hb_001073_060 Hb_001073_060 Hb_000676_030--Hb_001073_060 Hb_002219_090 Hb_002219_090 Hb_000676_030--Hb_002219_090 Hb_000676_030--Hb_079955_010 Hb_005000_200 Hb_005000_200 Hb_000676_030--Hb_005000_200 Hb_151281_010--Hb_000676_030 Hb_151281_010--Hb_011791_010 Hb_111985_060--Hb_005054_300 Hb_011054_030 Hb_011054_030 Hb_111985_060--Hb_011054_030 Hb_021596_070 Hb_021596_070 Hb_111985_060--Hb_021596_070 Hb_008667_020 Hb_008667_020 Hb_111985_060--Hb_008667_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.12003 0.432616 0.602851 0.0184602 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.10816 0.0372664

CAGE analysis