Hb_001073_060

Information

Type -
Description -
Location Contig1073: 62308-77033
Sequence    

Annotation

kegg
ID rcu:RCOM_1214240
description inorganic phosphate transporter, putative
nr
ID ADL27918.1
description phosphate transporter 1 [Hevea brasiliensis]
swissprot
ID Q96303
description Inorganic phosphate transporter 1-4 OS=Arabidopsis thaliana GN=PHT1-4 PE=1 SV=1
trembl
ID F1ASZ4
description Phosphate transporter 1 OS=Hevea brasiliensis GN=Pht1 PE=2 SV=1
Gene Ontology
ID GO:0016021
description phosphate transporter

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02300: 62456-66069 , PASA_asmbl_02301: 63008-63411
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001073_060 0.0 - - phosphate transporter 1 [Hevea brasiliensis]
2 Hb_002219_090 0.0913796955 - - protein kinase atmrk1, putative [Ricinus communis]
3 Hb_000856_240 0.0945418625 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
4 Hb_011791_010 0.0994840264 - - PREDICTED: cytochrome P450 83B1-like [Jatropha curcas]
5 Hb_000676_030 0.1029246855 - - PREDICTED: probable mitochondrial chaperone BCS1-B [Jatropha curcas]
6 Hb_000333_130 0.115326409 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
7 Hb_149056_010 0.1157284414 - - hypothetical protein CICLE_v10016664mg [Citrus clementina]
8 Hb_017417_030 0.1189530429 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
9 Hb_020648_020 0.1195749208 - - xenotropic and polytropic murine leukemia virus receptor pho1, putative [Ricinus communis]
10 Hb_000579_220 0.1207785103 - - transcription factor, putative [Ricinus communis]
11 Hb_000521_210 0.1232902882 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
12 Hb_002621_030 0.1247819647 - - hypothetical protein CISIN_1g006155mg [Citrus sinensis]
13 Hb_002410_010 0.1252658127 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
14 Hb_135811_060 0.1267136466 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
15 Hb_002248_090 0.1274958873 - - metallothionein 3-like protein [Hevea brasiliensis]
16 Hb_009581_040 0.128267998 - - hypothetical protein B456_011G052100 [Gossypium raimondii]
17 Hb_003938_010 0.128273527 transcription factor TF Family: ERF Ethylene-responsive transcription factor 1B, putative [Ricinus communis]
18 Hb_001009_110 0.1307967731 - - PREDICTED: uncharacterized protein LOC105640232 [Jatropha curcas]
19 Hb_003556_070 0.1313945802 - - metal ion binding protein, putative [Ricinus communis]
20 Hb_005000_200 0.1329522586 - - PREDICTED: uncharacterized protein LOC105637887 [Jatropha curcas]

Gene co-expression network

sample Hb_001073_060 Hb_001073_060 Hb_002219_090 Hb_002219_090 Hb_001073_060--Hb_002219_090 Hb_000856_240 Hb_000856_240 Hb_001073_060--Hb_000856_240 Hb_011791_010 Hb_011791_010 Hb_001073_060--Hb_011791_010 Hb_000676_030 Hb_000676_030 Hb_001073_060--Hb_000676_030 Hb_000333_130 Hb_000333_130 Hb_001073_060--Hb_000333_130 Hb_149056_010 Hb_149056_010 Hb_001073_060--Hb_149056_010 Hb_002219_090--Hb_149056_010 Hb_002219_090--Hb_011791_010 Hb_017417_030 Hb_017417_030 Hb_002219_090--Hb_017417_030 Hb_002219_090--Hb_000676_030 Hb_001009_110 Hb_001009_110 Hb_002219_090--Hb_001009_110 Hb_000856_240--Hb_149056_010 Hb_000255_020 Hb_000255_020 Hb_000856_240--Hb_000255_020 Hb_000521_210 Hb_000521_210 Hb_000856_240--Hb_000521_210 Hb_000579_220 Hb_000579_220 Hb_000856_240--Hb_000579_220 Hb_135811_060 Hb_135811_060 Hb_000856_240--Hb_135811_060 Hb_011791_010--Hb_000676_030 Hb_079955_010 Hb_079955_010 Hb_011791_010--Hb_079955_010 Hb_011791_010--Hb_000333_130 Hb_106969_010 Hb_106969_010 Hb_011791_010--Hb_106969_010 Hb_002621_030 Hb_002621_030 Hb_000676_030--Hb_002621_030 Hb_000676_030--Hb_079955_010 Hb_005000_200 Hb_005000_200 Hb_000676_030--Hb_005000_200 Hb_000333_130--Hb_106969_010 Hb_000333_130--Hb_149056_010 Hb_000333_130--Hb_001009_110 Hb_000333_130--Hb_002219_090 Hb_149056_010--Hb_001009_110 Hb_149056_010--Hb_000579_220 Hb_009778_030 Hb_009778_030 Hb_149056_010--Hb_009778_030 Hb_000123_310 Hb_000123_310 Hb_149056_010--Hb_000123_310
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.128187 38.3969 3.83233 9.55245 0.222038 0.131142
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.293204 0.243541 0.146834 17.0682 1.99222

CAGE analysis