Hb_000856_240

Information

Type -
Description -
Location Contig856: 219811-220596
Sequence    

Annotation

kegg
ID rcu:RCOM_1513410
description short chain alcohol dehydrogenase, putative (EC:1.1.1.100)
nr
ID XP_002511512.1
description short chain alcohol dehydrogenase, putative [Ricinus communis]
swissprot
ID P46331
description Uncharacterized oxidoreductase YxbG OS=Bacillus subtilis (strain 168) GN=yxbG PE=3 SV=2
trembl
ID B9R937
description Short chain alcohol dehydrogenase, putative OS=Ricinus communis GN=RCOM_1513410 PE=4 SV=1
Gene Ontology
ID GO:0004316
description (-)-isopiperitenol (-)-carveol mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 004_H17.ab1: 219598-220388 , 042_J15.ab1: 219598-220210

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000856_240 0.0 - - short chain alcohol dehydrogenase, putative [Ricinus communis]
2 Hb_149056_010 0.082605513 - - hypothetical protein CICLE_v10016664mg [Citrus clementina]
3 Hb_000255_020 0.0893934502 - - PREDICTED: cysteine-rich receptor-like protein kinase 10 [Jatropha curcas]
4 Hb_000521_210 0.0897837568 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
5 Hb_001073_060 0.0945418625 - - phosphate transporter 1 [Hevea brasiliensis]
6 Hb_000579_220 0.0971099585 - - transcription factor, putative [Ricinus communis]
7 Hb_135811_060 0.0993851193 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
8 Hb_000045_180 0.1046528856 - - aquaporin PIP1 [Hevea brasiliensis]
9 Hb_003938_010 0.1101283644 transcription factor TF Family: ERF Ethylene-responsive transcription factor 1B, putative [Ricinus communis]
10 Hb_084127_010 0.1107100375 - - UDP-glucosyltransferase, putative [Ricinus communis]
11 Hb_020648_020 0.1116462841 - - xenotropic and polytropic murine leukemia virus receptor pho1, putative [Ricinus communis]
12 Hb_002219_090 0.111771425 - - protein kinase atmrk1, putative [Ricinus communis]
13 Hb_009581_040 0.119412871 - - hypothetical protein B456_011G052100 [Gossypium raimondii]
14 Hb_001838_010 0.1201430441 - - hypothetical protein POPTR_0005s18380g [Populus trichocarpa]
15 Hb_011791_010 0.120208472 - - PREDICTED: cytochrome P450 83B1-like [Jatropha curcas]
16 Hb_003439_020 0.1210561325 - - PREDICTED: L-type lectin-domain containing receptor kinase IV.1-like [Solanum lycopersicum]
17 Hb_002410_010 0.1255972237 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
18 Hb_001515_050 0.130163669 - - PREDICTED: uncharacterized protein LOC105636626 [Jatropha curcas]
19 Hb_000907_120 0.131096225 transcription factor TF Family: G2-like PREDICTED: transcription repressor KAN1-like [Populus euphratica]
20 Hb_003430_020 0.1317945205 - - PREDICTED: aldehyde dehydrogenase family 2 member B7, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_000856_240 Hb_000856_240 Hb_149056_010 Hb_149056_010 Hb_000856_240--Hb_149056_010 Hb_000255_020 Hb_000255_020 Hb_000856_240--Hb_000255_020 Hb_000521_210 Hb_000521_210 Hb_000856_240--Hb_000521_210 Hb_001073_060 Hb_001073_060 Hb_000856_240--Hb_001073_060 Hb_000579_220 Hb_000579_220 Hb_000856_240--Hb_000579_220 Hb_135811_060 Hb_135811_060 Hb_000856_240--Hb_135811_060 Hb_002219_090 Hb_002219_090 Hb_149056_010--Hb_002219_090 Hb_001009_110 Hb_001009_110 Hb_149056_010--Hb_001009_110 Hb_149056_010--Hb_000579_220 Hb_009778_030 Hb_009778_030 Hb_149056_010--Hb_009778_030 Hb_000123_310 Hb_000123_310 Hb_149056_010--Hb_000123_310 Hb_003439_020 Hb_003439_020 Hb_000255_020--Hb_003439_020 Hb_001838_010 Hb_001838_010 Hb_000255_020--Hb_001838_010 Hb_134017_010 Hb_134017_010 Hb_000255_020--Hb_134017_010 Hb_074312_020 Hb_074312_020 Hb_000255_020--Hb_074312_020 Hb_009581_040 Hb_009581_040 Hb_000255_020--Hb_009581_040 Hb_000101_140 Hb_000101_140 Hb_000521_210--Hb_000101_140 Hb_084127_010 Hb_084127_010 Hb_000521_210--Hb_084127_010 Hb_000521_210--Hb_000579_220 Hb_000152_250 Hb_000152_250 Hb_000521_210--Hb_000152_250 Hb_000907_120 Hb_000907_120 Hb_000521_210--Hb_000907_120 Hb_001073_060--Hb_002219_090 Hb_011791_010 Hb_011791_010 Hb_001073_060--Hb_011791_010 Hb_000676_030 Hb_000676_030 Hb_001073_060--Hb_000676_030 Hb_000333_130 Hb_000333_130 Hb_001073_060--Hb_000333_130 Hb_001073_060--Hb_149056_010 Hb_007237_090 Hb_007237_090 Hb_000579_220--Hb_007237_090 Hb_000579_220--Hb_084127_010 Hb_006615_190 Hb_006615_190 Hb_000579_220--Hb_006615_190 Hb_000172_010 Hb_000172_010 Hb_000579_220--Hb_000172_010 Hb_020648_020 Hb_020648_020 Hb_000579_220--Hb_020648_020 Hb_017417_030 Hb_017417_030 Hb_135811_060--Hb_017417_030 Hb_000703_320 Hb_000703_320 Hb_135811_060--Hb_000703_320 Hb_000045_180 Hb_000045_180 Hb_135811_060--Hb_000045_180 Hb_135811_060--Hb_149056_010 Hb_005081_080 Hb_005081_080 Hb_135811_060--Hb_005081_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0300147 97.8632 8.14726 28.1698 0.0301457 0.0265512
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 50.0108 7.18442

CAGE analysis