Hb_007237_090

Information

Type -
Description -
Location Contig7237: 76675-77175
Sequence    

Annotation

kegg
ID rcu:RCOM_1691280
description hypothetical protein
nr
ID XP_002509936.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RCQ2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1691280 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007237_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_084127_010 0.0495991847 - - UDP-glucosyltransferase, putative [Ricinus communis]
3 Hb_006615_190 0.0500592639 - - UDP-glycosyltransferase 1 [Linum usitatissimum]
4 Hb_000579_220 0.0626809465 - - transcription factor, putative [Ricinus communis]
5 Hb_000072_160 0.0961698543 - - proline oxidase [Manihot esculenta]
6 Hb_000172_010 0.0962801545 - - PREDICTED: uncharacterized protein DDB_G0271670-like isoform X1 [Populus euphratica]
7 Hb_000521_210 0.0999773217 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
8 Hb_002329_030 0.1029278611 - - PREDICTED: pleiotropic drug resistance protein 2-like isoform X1 [Jatropha curcas]
9 Hb_002239_020 0.1047107414 - - MLO, putative [Theobroma cacao]
10 Hb_020648_020 0.1048756637 - - xenotropic and polytropic murine leukemia virus receptor pho1, putative [Ricinus communis]
11 Hb_002968_010 0.1080160583 - - PREDICTED: pectinesterase [Jatropha curcas]
12 Hb_145139_010 0.1160389753 - - PREDICTED: sugar transporter ERD6-like 5 isoform X1 [Vitis vinifera]
13 Hb_002272_070 0.1171684222 - - PREDICTED: keratin, type I cytoskeletal 9 [Jatropha curcas]
14 Hb_000338_030 0.1195972156 transcription factor TF Family: HB hypothetical protein JCGZ_21254 [Jatropha curcas]
15 Hb_004122_020 0.124100619 transcription factor TF Family: ERF ERF/AP2 domain-containing transcription factor [Manihot esculenta]
16 Hb_000094_010 0.1251841379 - - lrr receptor protein kinase, putative [Ricinus communis]
17 Hb_003439_020 0.1267532636 - - PREDICTED: L-type lectin-domain containing receptor kinase IV.1-like [Solanum lycopersicum]
18 Hb_000280_110 0.1269949587 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
19 Hb_002783_300 0.1279313074 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
20 Hb_000819_010 0.1292657561 - - Receptor-like protein kinase 1, putative [Theobroma cacao]

Gene co-expression network

sample Hb_007237_090 Hb_007237_090 Hb_084127_010 Hb_084127_010 Hb_007237_090--Hb_084127_010 Hb_006615_190 Hb_006615_190 Hb_007237_090--Hb_006615_190 Hb_000579_220 Hb_000579_220 Hb_007237_090--Hb_000579_220 Hb_000072_160 Hb_000072_160 Hb_007237_090--Hb_000072_160 Hb_000172_010 Hb_000172_010 Hb_007237_090--Hb_000172_010 Hb_000521_210 Hb_000521_210 Hb_007237_090--Hb_000521_210 Hb_084127_010--Hb_000579_220 Hb_084127_010--Hb_006615_190 Hb_084127_010--Hb_000521_210 Hb_074312_020 Hb_074312_020 Hb_084127_010--Hb_074312_020 Hb_020648_020 Hb_020648_020 Hb_084127_010--Hb_020648_020 Hb_006615_190--Hb_000579_220 Hb_006615_190--Hb_000072_160 Hb_006615_190--Hb_000172_010 Hb_002329_030 Hb_002329_030 Hb_006615_190--Hb_002329_030 Hb_000579_220--Hb_000172_010 Hb_000579_220--Hb_020648_020 Hb_000579_220--Hb_000521_210 Hb_002272_070 Hb_002272_070 Hb_000072_160--Hb_002272_070 Hb_000072_160--Hb_002329_030 Hb_145139_010 Hb_145139_010 Hb_000072_160--Hb_145139_010 Hb_002968_010 Hb_002968_010 Hb_000072_160--Hb_002968_010 Hb_014361_130 Hb_014361_130 Hb_000072_160--Hb_014361_130 Hb_001879_050 Hb_001879_050 Hb_000172_010--Hb_001879_050 Hb_000172_010--Hb_000072_160 Hb_000172_010--Hb_084127_010 Hb_000101_140 Hb_000101_140 Hb_000521_210--Hb_000101_140 Hb_000856_240 Hb_000856_240 Hb_000521_210--Hb_000856_240 Hb_000152_250 Hb_000152_250 Hb_000521_210--Hb_000152_250 Hb_000907_120 Hb_000907_120 Hb_000521_210--Hb_000907_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0731796 9.32797 1.05013 3.11269 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 3.36346 1.76902

CAGE analysis