Hb_001879_050

Information

Type -
Description -
Location Contig1879: 47506-59717
Sequence    

Annotation

kegg
ID rcu:RCOM_1331600
description Disease resistance protein RFL1, putative (EC:3.1.3.16)
nr
ID XP_002521789.1
description Disease resistance protein RFL1, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S720
description Disease resistance protein RFL1, putative OS=Ricinus communis GN=RCOM_1331600 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18512: 51769-52830 , PASA_asmbl_18514: 54635-54815 , PASA_asmbl_18515: 56579-58141 , PASA_asmbl_18517: 58710-59083
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001879_050 0.0 - - Disease resistance protein RFL1, putative [Ricinus communis]
2 Hb_000172_010 0.1003418523 - - PREDICTED: uncharacterized protein DDB_G0271670-like isoform X1 [Populus euphratica]
3 Hb_000984_100 0.1040798262 - - receptor protein kinase, putative [Ricinus communis]
4 Hb_002609_150 0.1194577355 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
5 Hb_002571_010 0.126539158 - - cationic amino acid transporter, putative [Ricinus communis]
6 Hb_001148_040 0.1334714791 - - hypothetical protein JCGZ_07831 [Jatropha curcas]
7 Hb_000579_220 0.1335786017 - - transcription factor, putative [Ricinus communis]
8 Hb_002783_300 0.1435567331 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
9 Hb_003371_260 0.1437682174 - - hypothetical protein EUGRSUZ_B03661 [Eucalyptus grandis]
10 Hb_002329_030 0.1444904463 - - PREDICTED: pleiotropic drug resistance protein 2-like isoform X1 [Jatropha curcas]
11 Hb_000808_160 0.1452289329 - - PREDICTED: uncharacterized protein LOC105647443 [Jatropha curcas]
12 Hb_001073_060 0.1492536943 - - phosphate transporter 1 [Hevea brasiliensis]
13 Hb_006198_060 0.1520392069 - - PREDICTED: protein SULFUR DEFICIENCY-INDUCED 1 [Jatropha curcas]
14 Hb_001608_030 0.1527584361 - - Protein NSP-INTERACTING KINASE 1 [Glycine soja]
15 Hb_010080_020 0.1527723534 - - PREDICTED: uncharacterized protein LOC105635249 [Jatropha curcas]
16 Hb_002248_090 0.1532080159 - - metallothionein 3-like protein [Hevea brasiliensis]
17 Hb_001921_010 0.15518316 - - ATP-dependent RNA helicase, putative [Ricinus communis]
18 Hb_062479_010 0.1552092328 - - hypothetical protein PHAVU_008G071200g [Phaseolus vulgaris]
19 Hb_007237_090 0.1554447188 - - conserved hypothetical protein [Ricinus communis]
20 Hb_017417_030 0.1557635285 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_001879_050 Hb_001879_050 Hb_000172_010 Hb_000172_010 Hb_001879_050--Hb_000172_010 Hb_000984_100 Hb_000984_100 Hb_001879_050--Hb_000984_100 Hb_002609_150 Hb_002609_150 Hb_001879_050--Hb_002609_150 Hb_002571_010 Hb_002571_010 Hb_001879_050--Hb_002571_010 Hb_001148_040 Hb_001148_040 Hb_001879_050--Hb_001148_040 Hb_000579_220 Hb_000579_220 Hb_001879_050--Hb_000579_220 Hb_000172_010--Hb_000579_220 Hb_006615_190 Hb_006615_190 Hb_000172_010--Hb_006615_190 Hb_007237_090 Hb_007237_090 Hb_000172_010--Hb_007237_090 Hb_000072_160 Hb_000072_160 Hb_000172_010--Hb_000072_160 Hb_084127_010 Hb_084127_010 Hb_000172_010--Hb_084127_010 Hb_000544_020 Hb_000544_020 Hb_000984_100--Hb_000544_020 Hb_001608_030 Hb_001608_030 Hb_000984_100--Hb_001608_030 Hb_000984_100--Hb_002571_010 Hb_003371_260 Hb_003371_260 Hb_000984_100--Hb_003371_260 Hb_004466_070 Hb_004466_070 Hb_000984_100--Hb_004466_070 Hb_002609_150--Hb_001148_040 Hb_000007_160 Hb_000007_160 Hb_002609_150--Hb_000007_160 Hb_000532_130 Hb_000532_130 Hb_002609_150--Hb_000532_130 Hb_002609_150--Hb_000172_010 Hb_002739_060 Hb_002739_060 Hb_002609_150--Hb_002739_060 Hb_000808_160 Hb_000808_160 Hb_002571_010--Hb_000808_160 Hb_009247_030 Hb_009247_030 Hb_002571_010--Hb_009247_030 Hb_000172_080 Hb_000172_080 Hb_002571_010--Hb_000172_080 Hb_001754_200 Hb_001754_200 Hb_002571_010--Hb_001754_200 Hb_004166_010 Hb_004166_010 Hb_002571_010--Hb_004166_010 Hb_001148_040--Hb_000007_160 Hb_140848_010 Hb_140848_010 Hb_001148_040--Hb_140848_010 Hb_010381_110 Hb_010381_110 Hb_001148_040--Hb_010381_110 Hb_008406_020 Hb_008406_020 Hb_001148_040--Hb_008406_020 Hb_000778_020 Hb_000778_020 Hb_001148_040--Hb_000778_020 Hb_000579_220--Hb_007237_090 Hb_000579_220--Hb_084127_010 Hb_000579_220--Hb_006615_190 Hb_020648_020 Hb_020648_020 Hb_000579_220--Hb_020648_020 Hb_000521_210 Hb_000521_210 Hb_000579_220--Hb_000521_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.465978 26.9823 1.58682 8.01748 0.576293 0.616381
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.174435 0.210486 0.456588 9.27838 3.89895

CAGE analysis