Hb_003371_260

Information

Type -
Description -
Location Contig3371: 192238-214232
Sequence    

Annotation

kegg
ID pmum:103339668
description beta-glucosidase 12-like
nr
ID KCW87133.1
description hypothetical protein EUGRSUZ_B03661 [Eucalyptus grandis]
swissprot
ID Q9FMD8
description Putative beta-glucosidase 2 OS=Arabidopsis thaliana GN=BGLU2 PE=5 SV=2
trembl
ID A0A059D8R0
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B03661 PE=3 SV=1
Gene Ontology
ID GO:0004553
description beta-glucosidase 12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003371_260 0.0 - - hypothetical protein EUGRSUZ_B03661 [Eucalyptus grandis]
2 Hb_003371_210 0.1101873214 - - unnamed protein product [Vitis vinifera]
3 Hb_066320_010 0.1261810046 - - hypothetical protein VITISV_027639 [Vitis vinifera]
4 Hb_000431_030 0.1274693434 transcription factor TF Family: C2H2 zinc finger family protein [Populus trichocarpa]
5 Hb_002239_030 0.136960834 transcription factor TF Family: ARF PREDICTED: auxin response factor 4 [Jatropha curcas]
6 Hb_010381_110 0.1379617125 - - PRA1 family protein [Theobroma cacao]
7 Hb_014361_130 0.141066107 - - PREDICTED: uncharacterized protein LOC105639824 [Jatropha curcas]
8 Hb_001879_050 0.1437682174 - - Disease resistance protein RFL1, putative [Ricinus communis]
9 Hb_062479_010 0.1470588524 - - hypothetical protein PHAVU_008G071200g [Phaseolus vulgaris]
10 Hb_000007_210 0.148002566 - - hypothetical protein POPTR_0010s14360g [Populus trichocarpa]
11 Hb_002329_030 0.1495182012 - - PREDICTED: pleiotropic drug resistance protein 2-like isoform X1 [Jatropha curcas]
12 Hb_000984_100 0.1502716233 - - receptor protein kinase, putative [Ricinus communis]
13 Hb_000101_140 0.1508395984 - - amino acid transporter, putative [Ricinus communis]
14 Hb_002968_010 0.1522901491 - - PREDICTED: pectinesterase [Jatropha curcas]
15 Hb_000172_010 0.1526652059 - - PREDICTED: uncharacterized protein DDB_G0271670-like isoform X1 [Populus euphratica]
16 Hb_002248_090 0.153141422 - - metallothionein 3-like protein [Hevea brasiliensis]
17 Hb_000723_060 0.1531901376 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
18 Hb_064047_010 0.1564989726 - - conserved hypothetical protein [Ricinus communis]
19 Hb_169620_010 0.1566382527 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
20 Hb_140848_010 0.1575769822 - - hypothetical protein POPTR_0014s17480g [Populus trichocarpa]

Gene co-expression network

sample Hb_003371_260 Hb_003371_260 Hb_003371_210 Hb_003371_210 Hb_003371_260--Hb_003371_210 Hb_066320_010 Hb_066320_010 Hb_003371_260--Hb_066320_010 Hb_000431_030 Hb_000431_030 Hb_003371_260--Hb_000431_030 Hb_002239_030 Hb_002239_030 Hb_003371_260--Hb_002239_030 Hb_010381_110 Hb_010381_110 Hb_003371_260--Hb_010381_110 Hb_014361_130 Hb_014361_130 Hb_003371_260--Hb_014361_130 Hb_064047_010 Hb_064047_010 Hb_003371_210--Hb_064047_010 Hb_003371_210--Hb_066320_010 Hb_003371_210--Hb_010381_110 Hb_001791_010 Hb_001791_010 Hb_003371_210--Hb_001791_010 Hb_169620_010 Hb_169620_010 Hb_003371_210--Hb_169620_010 Hb_066320_010--Hb_014361_130 Hb_066320_010--Hb_169620_010 Hb_000101_140 Hb_000101_140 Hb_066320_010--Hb_000101_140 Hb_017604_020 Hb_017604_020 Hb_066320_010--Hb_017604_020 Hb_002248_090 Hb_002248_090 Hb_000431_030--Hb_002248_090 Hb_000431_030--Hb_002239_030 Hb_024857_010 Hb_024857_010 Hb_000431_030--Hb_024857_010 Hb_000431_030--Hb_000101_140 Hb_012760_060 Hb_012760_060 Hb_000431_030--Hb_012760_060 Hb_002239_030--Hb_000101_140 Hb_000723_060 Hb_000723_060 Hb_002239_030--Hb_000723_060 Hb_002239_030--Hb_002248_090 Hb_002239_030--Hb_024857_010 Hb_000656_370 Hb_000656_370 Hb_002239_030--Hb_000656_370 Hb_060237_010 Hb_060237_010 Hb_002239_030--Hb_060237_010 Hb_010381_110--Hb_064047_010 Hb_001148_040 Hb_001148_040 Hb_010381_110--Hb_001148_040 Hb_005695_020 Hb_005695_020 Hb_010381_110--Hb_005695_020 Hb_001259_100 Hb_001259_100 Hb_010381_110--Hb_001259_100 Hb_004032_250 Hb_004032_250 Hb_010381_110--Hb_004032_250 Hb_000072_160 Hb_000072_160 Hb_014361_130--Hb_000072_160 Hb_002329_030 Hb_002329_030 Hb_014361_130--Hb_002329_030 Hb_002272_070 Hb_002272_070 Hb_014361_130--Hb_002272_070 Hb_145139_010 Hb_145139_010 Hb_014361_130--Hb_145139_010 Hb_009247_030 Hb_009247_030 Hb_014361_130--Hb_009247_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0609071 6.00268 0.334325 3.26865 0.133574 0.35838
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0158574 0 0.0238351 1.62419 0.824016

CAGE analysis