Hb_066320_010

Information

Type -
Description -
Location Contig66320: 54-918
Sequence    

Annotation

kegg
ID sbi:SORBI_06g013680
description SORBIDRAFT_06g013680, Sb06g013680; hypothetical protein
nr
ID CAN74058.1
description hypothetical protein VITISV_027639 [Vitis vinifera]
swissprot
ID Q91DM0
description Genome polyprotein OS=Petunia vein clearing virus (isolate Shepherd) PE=3 SV=1
trembl
ID A5B1P8
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027639 PE=4 SV=1
Gene Ontology
ID GO:0003676
description reverse transcriptase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_066320_010 0.0 - - hypothetical protein VITISV_027639 [Vitis vinifera]
2 Hb_014361_130 0.1153944438 - - PREDICTED: uncharacterized protein LOC105639824 [Jatropha curcas]
3 Hb_003371_260 0.1261810046 - - hypothetical protein EUGRSUZ_B03661 [Eucalyptus grandis]
4 Hb_003371_210 0.1468867886 - - unnamed protein product [Vitis vinifera]
5 Hb_169620_010 0.1485037845 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
6 Hb_000101_140 0.149642044 - - amino acid transporter, putative [Ricinus communis]
7 Hb_017604_020 0.1516806954 - - hypothetical protein JCGZ_22673 [Jatropha curcas]
8 Hb_002968_010 0.1532486998 - - PREDICTED: pectinesterase [Jatropha curcas]
9 Hb_000723_060 0.1534050685 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
10 Hb_006615_180 0.1541421321 - - hypothetical protein B456_003G103400 [Gossypium raimondii]
11 Hb_002329_030 0.155122657 - - PREDICTED: pleiotropic drug resistance protein 2-like isoform X1 [Jatropha curcas]
12 Hb_009510_050 0.1564607294 - - conserved hypothetical protein [Ricinus communis]
13 Hb_005784_020 0.1571952966 - - Protein MKS1, putative [Ricinus communis]
14 Hb_000521_210 0.1573824845 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
15 Hb_084127_010 0.1580147977 - - UDP-glucosyltransferase, putative [Ricinus communis]
16 Hb_000656_370 0.1631259368 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
17 Hb_006198_060 0.1649855852 - - PREDICTED: protein SULFUR DEFICIENCY-INDUCED 1 [Jatropha curcas]
18 Hb_010381_110 0.1651434821 - - PRA1 family protein [Theobroma cacao]
19 Hb_000007_210 0.1663730195 - - hypothetical protein POPTR_0010s14360g [Populus trichocarpa]
20 Hb_145139_010 0.1668167079 - - PREDICTED: sugar transporter ERD6-like 5 isoform X1 [Vitis vinifera]

Gene co-expression network

sample Hb_066320_010 Hb_066320_010 Hb_014361_130 Hb_014361_130 Hb_066320_010--Hb_014361_130 Hb_003371_260 Hb_003371_260 Hb_066320_010--Hb_003371_260 Hb_003371_210 Hb_003371_210 Hb_066320_010--Hb_003371_210 Hb_169620_010 Hb_169620_010 Hb_066320_010--Hb_169620_010 Hb_000101_140 Hb_000101_140 Hb_066320_010--Hb_000101_140 Hb_017604_020 Hb_017604_020 Hb_066320_010--Hb_017604_020 Hb_000072_160 Hb_000072_160 Hb_014361_130--Hb_000072_160 Hb_002329_030 Hb_002329_030 Hb_014361_130--Hb_002329_030 Hb_002272_070 Hb_002272_070 Hb_014361_130--Hb_002272_070 Hb_145139_010 Hb_145139_010 Hb_014361_130--Hb_145139_010 Hb_009247_030 Hb_009247_030 Hb_014361_130--Hb_009247_030 Hb_003371_260--Hb_003371_210 Hb_000431_030 Hb_000431_030 Hb_003371_260--Hb_000431_030 Hb_002239_030 Hb_002239_030 Hb_003371_260--Hb_002239_030 Hb_010381_110 Hb_010381_110 Hb_003371_260--Hb_010381_110 Hb_003371_260--Hb_014361_130 Hb_064047_010 Hb_064047_010 Hb_003371_210--Hb_064047_010 Hb_003371_210--Hb_010381_110 Hb_001791_010 Hb_001791_010 Hb_003371_210--Hb_001791_010 Hb_003371_210--Hb_169620_010 Hb_004648_100 Hb_004648_100 Hb_169620_010--Hb_004648_100 Hb_060909_010 Hb_060909_010 Hb_169620_010--Hb_060909_010 Hb_163658_010 Hb_163658_010 Hb_169620_010--Hb_163658_010 Hb_000544_020 Hb_000544_020 Hb_169620_010--Hb_000544_020 Hb_001408_150 Hb_001408_150 Hb_169620_010--Hb_001408_150 Hb_000656_370 Hb_000656_370 Hb_000101_140--Hb_000656_370 Hb_000723_060 Hb_000723_060 Hb_000101_140--Hb_000723_060 Hb_000101_140--Hb_002239_030 Hb_002968_010 Hb_002968_010 Hb_000101_140--Hb_002968_010 Hb_006615_180 Hb_006615_180 Hb_000101_140--Hb_006615_180 Hb_000521_210 Hb_000521_210 Hb_000101_140--Hb_000521_210 Hb_001699_050 Hb_001699_050 Hb_017604_020--Hb_001699_050 Hb_002276_100 Hb_002276_100 Hb_017604_020--Hb_002276_100 Hb_000808_160 Hb_000808_160 Hb_017604_020--Hb_000808_160 Hb_003556_070 Hb_003556_070 Hb_017604_020--Hb_003556_070 Hb_004544_090 Hb_004544_090 Hb_017604_020--Hb_004544_090 Hb_009510_050 Hb_009510_050 Hb_017604_020--Hb_009510_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.750417 0.0860865 0.341584 0 0.0659691
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.243656 0.101246

CAGE analysis