Hb_064047_010

Information

Type -
Description -
Location Contig64047: 7418-8596
Sequence    

Annotation

kegg
ID rcu:RCOM_1688330
description hypothetical protein
nr
ID XP_002509855.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RCH1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1688330 PE=4 SV=1
Gene Ontology
ID GO:0016491
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_52159: 7212-8718
cDNA
(Sanger)
(ID:Location)		 007_I22.ab1: 7926-8718 , 010_B08.ab1: 8084-8681 , 042_I14.ab1: 8046-8718 , 046_O16.ab1: 8100-8718 , 047_M13.ab1: 8012-8718

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_064047_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000816_050 0.0990018475 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
3 Hb_005784_020 0.1089291762 - - Protein MKS1, putative [Ricinus communis]
4 Hb_002431_090 0.1174574744 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002324_040 0.1176494957 - - PREDICTED: subtilisin-like protease SBT1.6 [Jatropha curcas]
6 Hb_010381_110 0.1189573625 - - PRA1 family protein [Theobroma cacao]
7 Hb_000976_340 0.1203099307 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
8 Hb_002324_050 0.1213869993 - - hypothetical protein AMTR_s00420p00013340 [Amborella trichopoda]
9 Hb_004032_250 0.1236633815 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000116_290 0.1278162361 - - PREDICTED: proton-coupled amino acid transporter 3 [Jatropha curcas]
11 Hb_001071_060 0.1303913423 - - Trehalose phosphatase/synthase 5 isoform 1 [Theobroma cacao]
12 Hb_003025_150 0.1364455304 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000111_190 0.1374508208 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1 [Jatropha curcas]
14 Hb_004282_040 0.1390326846 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
15 Hb_000808_160 0.1406984236 - - PREDICTED: uncharacterized protein LOC105647443 [Jatropha curcas]
16 Hb_050898_010 0.141894099 - - PREDICTED: receptor-like protein kinase FERONIA [Jatropha curcas]
17 Hb_002329_030 0.1418969438 - - PREDICTED: pleiotropic drug resistance protein 2-like isoform X1 [Jatropha curcas]
18 Hb_000325_010 0.1426039475 desease resistance Gene Name: NB-ARC Disease resistance protein RGA2, putative [Ricinus communis]
19 Hb_062479_010 0.1436518453 - - hypothetical protein PHAVU_008G071200g [Phaseolus vulgaris]
20 Hb_017604_020 0.1437784013 - - hypothetical protein JCGZ_22673 [Jatropha curcas]

Gene co-expression network

sample Hb_064047_010 Hb_064047_010 Hb_000816_050 Hb_000816_050 Hb_064047_010--Hb_000816_050 Hb_005784_020 Hb_005784_020 Hb_064047_010--Hb_005784_020 Hb_002431_090 Hb_002431_090 Hb_064047_010--Hb_002431_090 Hb_002324_040 Hb_002324_040 Hb_064047_010--Hb_002324_040 Hb_010381_110 Hb_010381_110 Hb_064047_010--Hb_010381_110 Hb_000976_340 Hb_000976_340 Hb_064047_010--Hb_000976_340 Hb_050898_010 Hb_050898_010 Hb_000816_050--Hb_050898_010 Hb_002477_080 Hb_002477_080 Hb_000816_050--Hb_002477_080 Hb_000816_050--Hb_002431_090 Hb_000325_010 Hb_000325_010 Hb_000816_050--Hb_000325_010 Hb_002272_070 Hb_002272_070 Hb_000816_050--Hb_002272_070 Hb_008092_020 Hb_008092_020 Hb_005784_020--Hb_008092_020 Hb_002276_100 Hb_002276_100 Hb_005784_020--Hb_002276_100 Hb_000028_460 Hb_000028_460 Hb_005784_020--Hb_000028_460 Hb_005784_020--Hb_000976_340 Hb_004544_090 Hb_004544_090 Hb_005784_020--Hb_004544_090 Hb_000497_100 Hb_000497_100 Hb_005784_020--Hb_000497_100 Hb_189034_010 Hb_189034_010 Hb_002431_090--Hb_189034_010 Hb_002431_090--Hb_002477_080 Hb_003835_030 Hb_003835_030 Hb_002431_090--Hb_003835_030 Hb_000477_010 Hb_000477_010 Hb_002431_090--Hb_000477_010 Hb_002431_090--Hb_008092_020 Hb_003025_150 Hb_003025_150 Hb_002324_040--Hb_003025_150 Hb_012727_010 Hb_012727_010 Hb_002324_040--Hb_012727_010 Hb_002324_050 Hb_002324_050 Hb_002324_040--Hb_002324_050 Hb_003579_040 Hb_003579_040 Hb_002324_040--Hb_003579_040 Hb_004032_250 Hb_004032_250 Hb_002324_040--Hb_004032_250 Hb_001148_040 Hb_001148_040 Hb_010381_110--Hb_001148_040 Hb_005695_020 Hb_005695_020 Hb_010381_110--Hb_005695_020 Hb_001259_100 Hb_001259_100 Hb_010381_110--Hb_001259_100 Hb_010381_110--Hb_004032_250 Hb_003371_260 Hb_003371_260 Hb_010381_110--Hb_003371_260 Hb_000116_290 Hb_000116_290 Hb_000976_340--Hb_000116_290 Hb_001248_170 Hb_001248_170 Hb_000976_340--Hb_001248_170 Hb_000094_010 Hb_000094_010 Hb_000976_340--Hb_000094_010 Hb_008040_060 Hb_008040_060 Hb_000976_340--Hb_008040_060 Hb_002329_030 Hb_002329_030 Hb_000976_340--Hb_002329_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.22316 34.0504 7.05328 28.4259 0.282636 1.15045
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.20719 0.260764 0.363485 13.754 8.6934

CAGE analysis