Hb_012727_010

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig12727: 28926-32624
Sequence    

Annotation

kegg
ID pop:POPTR_0016s09570g
description POPTRDRAFT_576722; hypothetical protein
nr
ID XP_012067049.1
description PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
swissprot
ID Q38834
description Disease resistance RPP13-like protein 4 OS=Arabidopsis thaliana GN=RPP13L4 PE=2 SV=2
trembl
ID A0A067L0S0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01849 PE=4 SV=1
Gene Ontology
ID GO:0032550
description disease resistance rpp13-like protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08339: 28942-31122
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012727_010 0.0 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
2 Hb_002324_040 0.0803141856 - - PREDICTED: subtilisin-like protease SBT1.6 [Jatropha curcas]
3 Hb_003025_150 0.1127888823 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003647_040 0.1161618106 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001178_080 0.1200004928 - - PREDICTED: protein kinase PVPK-1 [Jatropha curcas]
6 Hb_001832_210 0.1279760226 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
7 Hb_003579_040 0.1299290246 - - PREDICTED: monoacylglycerol lipase ABHD6 [Jatropha curcas]
8 Hb_005016_020 0.132554393 desease resistance Gene Name: ABC_membrane ABC transporter family protein [Hevea brasiliensis]
9 Hb_000062_490 0.1325911852 - - PREDICTED: lipoxygenase 6, chloroplastic [Jatropha curcas]
10 Hb_002119_040 0.1373438432 - - receptor protein kinase, putative [Ricinus communis]
11 Hb_001071_060 0.1406888877 - - Trehalose phosphatase/synthase 5 isoform 1 [Theobroma cacao]
12 Hb_000540_040 0.1414976222 - - PREDICTED: chitinase 2 [Amborella trichopoda]
13 Hb_000025_400 0.142780514 - - PREDICTED: uncharacterized protein LOC105110770 [Populus euphratica]
14 Hb_006831_080 0.1438123192 - - PREDICTED: uncharacterized protein LOC105642126 [Jatropha curcas]
15 Hb_000000_110 0.1450903349 - - hypothetical protein CISIN_1g0027772mg, partial [Citrus sinensis]
16 Hb_000085_380 0.1488322606 - - conserved hypothetical protein [Ricinus communis]
17 Hb_064047_010 0.1518701852 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001596_020 0.1535833097 - - hypothetical protein CICLE_v10014140mg [Citrus clementina]
19 Hb_025432_010 0.1542757657 - - hypothetical protein JCGZ_21627 [Jatropha curcas]
20 Hb_002324_050 0.1544507074 - - hypothetical protein AMTR_s00420p00013340 [Amborella trichopoda]

Gene co-expression network

sample Hb_012727_010 Hb_012727_010 Hb_002324_040 Hb_002324_040 Hb_012727_010--Hb_002324_040 Hb_003025_150 Hb_003025_150 Hb_012727_010--Hb_003025_150 Hb_003647_040 Hb_003647_040 Hb_012727_010--Hb_003647_040 Hb_001178_080 Hb_001178_080 Hb_012727_010--Hb_001178_080 Hb_001832_210 Hb_001832_210 Hb_012727_010--Hb_001832_210 Hb_003579_040 Hb_003579_040 Hb_012727_010--Hb_003579_040 Hb_002324_040--Hb_003025_150 Hb_002324_050 Hb_002324_050 Hb_002324_040--Hb_002324_050 Hb_002324_040--Hb_003579_040 Hb_064047_010 Hb_064047_010 Hb_002324_040--Hb_064047_010 Hb_004032_250 Hb_004032_250 Hb_002324_040--Hb_004032_250 Hb_003025_150--Hb_003579_040 Hb_003025_150--Hb_002324_050 Hb_002078_250 Hb_002078_250 Hb_003025_150--Hb_002078_250 Hb_003656_170 Hb_003656_170 Hb_003025_150--Hb_003656_170 Hb_001491_040 Hb_001491_040 Hb_003647_040--Hb_001491_040 Hb_002119_040 Hb_002119_040 Hb_003647_040--Hb_002119_040 Hb_000032_430 Hb_000032_430 Hb_003647_040--Hb_000032_430 Hb_000866_320 Hb_000866_320 Hb_003647_040--Hb_000866_320 Hb_000189_070 Hb_000189_070 Hb_003647_040--Hb_000189_070 Hb_005016_020 Hb_005016_020 Hb_001178_080--Hb_005016_020 Hb_000000_110 Hb_000000_110 Hb_001178_080--Hb_000000_110 Hb_001596_020 Hb_001596_020 Hb_001178_080--Hb_001596_020 Hb_006949_060 Hb_006949_060 Hb_001178_080--Hb_006949_060 Hb_017159_010 Hb_017159_010 Hb_001178_080--Hb_017159_010 Hb_001071_060 Hb_001071_060 Hb_001832_210--Hb_001071_060 Hb_001832_210--Hb_000000_110 Hb_000197_230 Hb_000197_230 Hb_001832_210--Hb_000197_230 Hb_000997_340 Hb_000997_340 Hb_001832_210--Hb_000997_340 Hb_000220_080 Hb_000220_080 Hb_001832_210--Hb_000220_080 Hb_000085_380 Hb_000085_380 Hb_001832_210--Hb_000085_380 Hb_000111_190 Hb_000111_190 Hb_003579_040--Hb_000111_190 Hb_000914_110 Hb_000914_110 Hb_003579_040--Hb_000914_110 Hb_004544_090 Hb_004544_090 Hb_003579_040--Hb_004544_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.03933 9.29039 4.28616 13.0612 0.392801 0.686504
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.418478 0.087817 0.525278 7.01687 2.46081

CAGE analysis