Hb_000197_230

Information

Type transcription factor
Description TF Family: bZIP
Location Contig197: 265230-265685
Sequence    

Annotation

kegg
ID rcu:RCOM_1448130
description Ocs element-binding factor, putative
nr
ID XP_002512945.1
description Ocs element-binding factor, putative [Ricinus communis]
swissprot
ID P24068
description Ocs element-binding factor 1 OS=Zea mays GN=OBF1 PE=2 SV=2
trembl
ID B9RH86
description Ocs element-binding factor, putative OS=Ricinus communis GN=RCOM_1448130 PE=4 SV=1
Gene Ontology
ID GO:0003700
description ocs element-binding factor 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19780: 264547-265979
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000197_230 0.0 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
2 Hb_001071_060 0.1098350446 - - Trehalose phosphatase/synthase 5 isoform 1 [Theobroma cacao]
3 Hb_001832_210 0.1110326588 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]
4 Hb_010605_010 0.1118505378 desease resistance Gene Name: NB-ARC Disease resistance protein RPM1, putative [Ricinus communis]
5 Hb_002833_020 0.1237697659 desease resistance Gene Name: LRR_4 PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
6 Hb_000100_210 0.1269247446 - - PREDICTED: selenium-binding protein 1-like [Jatropha curcas]
7 Hb_001391_100 0.127275719 - - AMP dependent ligase, putative [Ricinus communis]
8 Hb_005880_010 0.1340258081 - - PREDICTED: uncharacterized protein LOC105646431 [Jatropha curcas]
9 Hb_001522_040 0.135026424 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
10 Hb_000997_340 0.1357026794 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
11 Hb_001408_150 0.1361900871 - - PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
12 Hb_159411_010 0.1374288557 - - PREDICTED: receptor-like protein 12 [Jatropha curcas]
13 Hb_062229_010 0.1397342178 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
14 Hb_000778_020 0.1466939108 - - PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
15 Hb_002739_060 0.1472939981 - - -
16 Hb_052117_010 0.1526528029 - - kinase, putative [Ricinus communis]
17 Hb_002685_030 0.1528832891 - - PREDICTED: protein SMG7L [Jatropha curcas]
18 Hb_005288_210 0.1550196191 - - hypothetical protein VITISV_017217 [Vitis vinifera]
19 Hb_002003_040 0.1566012384 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Jatropha curcas]
20 Hb_001369_160 0.1568972471 - - PREDICTED: uncharacterized protein LOC105648628 [Jatropha curcas]

Gene co-expression network

sample Hb_000197_230 Hb_000197_230 Hb_001071_060 Hb_001071_060 Hb_000197_230--Hb_001071_060 Hb_001832_210 Hb_001832_210 Hb_000197_230--Hb_001832_210 Hb_010605_010 Hb_010605_010 Hb_000197_230--Hb_010605_010 Hb_002833_020 Hb_002833_020 Hb_000197_230--Hb_002833_020 Hb_000100_210 Hb_000100_210 Hb_000197_230--Hb_000100_210 Hb_001391_100 Hb_001391_100 Hb_000197_230--Hb_001391_100 Hb_001071_060--Hb_001832_210 Hb_004531_110 Hb_004531_110 Hb_001071_060--Hb_004531_110 Hb_064047_010 Hb_064047_010 Hb_001071_060--Hb_064047_010 Hb_000778_020 Hb_000778_020 Hb_001071_060--Hb_000778_020 Hb_002324_040 Hb_002324_040 Hb_001071_060--Hb_002324_040 Hb_000000_110 Hb_000000_110 Hb_001832_210--Hb_000000_110 Hb_000997_340 Hb_000997_340 Hb_001832_210--Hb_000997_340 Hb_000220_080 Hb_000220_080 Hb_001832_210--Hb_000220_080 Hb_000085_380 Hb_000085_380 Hb_001832_210--Hb_000085_380 Hb_002119_070 Hb_002119_070 Hb_010605_010--Hb_002119_070 Hb_163658_010 Hb_163658_010 Hb_010605_010--Hb_163658_010 Hb_001408_150 Hb_001408_150 Hb_010605_010--Hb_001408_150 Hb_010605_010--Hb_001071_060 Hb_010605_010--Hb_001391_100 Hb_001008_110 Hb_001008_110 Hb_002833_020--Hb_001008_110 Hb_000417_280 Hb_000417_280 Hb_002833_020--Hb_000417_280 Hb_002833_020--Hb_000100_210 Hb_002833_020--Hb_000085_380 Hb_000120_310 Hb_000120_310 Hb_002833_020--Hb_000120_310 Hb_042202_020 Hb_042202_020 Hb_002833_020--Hb_042202_020 Hb_001522_040 Hb_001522_040 Hb_000100_210--Hb_001522_040 Hb_029748_020 Hb_029748_020 Hb_000100_210--Hb_029748_020 Hb_000100_210--Hb_000997_340 Hb_023386_050 Hb_023386_050 Hb_000100_210--Hb_023386_050 Hb_002686_210 Hb_002686_210 Hb_000100_210--Hb_002686_210 Hb_062229_010 Hb_062229_010 Hb_001391_100--Hb_062229_010 Hb_061908_020 Hb_061908_020 Hb_001391_100--Hb_061908_020 Hb_000261_320 Hb_000261_320 Hb_001391_100--Hb_000261_320 Hb_002003_040 Hb_002003_040 Hb_001391_100--Hb_002003_040 Hb_004605_020 Hb_004605_020 Hb_001391_100--Hb_004605_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.4881 238.574 79.0976 170.634 25.7735 44.6852
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.470509 0.862356 1.22664 188.426 115.532

CAGE analysis