Hb_001408_150

Information

Type -
Description -
Location Contig1408: 122254-127247
Sequence    

Annotation

kegg
ID egr:104445959
description uncharacterized LOC104445959
nr
ID XP_012070035.1
description PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L719
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03435 PE=4 SV=1
Gene Ontology
ID GO:0046872
description cysteine histidine-rich c1 domain family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11053: 121976-122382 , PASA_asmbl_11054: 122455-122804 , PASA_asmbl_11055: 122845-123216 , PASA_asmbl_11057: 123500-124281
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001408_150 0.0 - - PREDICTED: uncharacterized protein LOC105632300 isoform X1 [Jatropha curcas]
2 Hb_060909_010 0.1080043239 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
3 Hb_000778_020 0.1127573906 - - PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
4 Hb_008175_030 0.1135754956 transcription factor TF Family: TAZ PREDICTED: BTB/POZ and TAZ domain-containing protein 3 [Jatropha curcas]
5 Hb_002739_060 0.1205694006 - - -
6 Hb_000532_130 0.126686025 - - hypothetical protein [Anabaena sp. PCC 7108]
7 Hb_000197_230 0.1361900871 transcription factor TF Family: bZIP Ocs element-binding factor, putative [Ricinus communis]
8 Hb_000233_100 0.140429511 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
9 Hb_008226_100 0.1450558452 - - PREDICTED: TMV resistance protein N-like [Jatropha curcas]
10 Hb_001071_060 0.1463678107 - - Trehalose phosphatase/synthase 5 isoform 1 [Theobroma cacao]
11 Hb_001608_030 0.1465570556 - - Protein NSP-INTERACTING KINASE 1 [Glycine soja]
12 Hb_002609_150 0.146563119 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
13 Hb_057079_020 0.1479865583 - - conserved hypothetical protein [Ricinus communis]
14 Hb_010605_010 0.1480169479 desease resistance Gene Name: NB-ARC Disease resistance protein RPM1, putative [Ricinus communis]
15 Hb_000007_160 0.1491518722 - - hypothetical protein POPTR_0008s10970g [Populus trichocarpa]
16 Hb_062229_010 0.1505184407 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
17 Hb_011310_200 0.1515972392 - - grr1, plant, putative [Ricinus communis]
18 Hb_007253_040 0.1532526311 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-10 isoform X1 [Jatropha curcas]
19 Hb_169620_010 0.1543336358 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
20 Hb_000544_020 0.1570259649 desease resistance Gene Name: NB-ARC leucine-rich repeat containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001408_150 Hb_001408_150 Hb_060909_010 Hb_060909_010 Hb_001408_150--Hb_060909_010 Hb_000778_020 Hb_000778_020 Hb_001408_150--Hb_000778_020 Hb_008175_030 Hb_008175_030 Hb_001408_150--Hb_008175_030 Hb_002739_060 Hb_002739_060 Hb_001408_150--Hb_002739_060 Hb_000532_130 Hb_000532_130 Hb_001408_150--Hb_000532_130 Hb_000197_230 Hb_000197_230 Hb_001408_150--Hb_000197_230 Hb_000544_020 Hb_000544_020 Hb_060909_010--Hb_000544_020 Hb_000233_100 Hb_000233_100 Hb_060909_010--Hb_000233_100 Hb_004648_100 Hb_004648_100 Hb_060909_010--Hb_004648_100 Hb_008226_100 Hb_008226_100 Hb_060909_010--Hb_008226_100 Hb_060909_010--Hb_000532_130 Hb_000778_020--Hb_008175_030 Hb_057079_020 Hb_057079_020 Hb_000778_020--Hb_057079_020 Hb_002928_180 Hb_002928_180 Hb_000778_020--Hb_002928_180 Hb_010253_020 Hb_010253_020 Hb_000778_020--Hb_010253_020 Hb_000189_120 Hb_000189_120 Hb_000778_020--Hb_000189_120 Hb_008175_030--Hb_002739_060 Hb_005880_010 Hb_005880_010 Hb_008175_030--Hb_005880_010 Hb_008175_030--Hb_057079_020 Hb_008175_030--Hb_000532_130 Hb_002739_060--Hb_000532_130 Hb_002739_060--Hb_000778_020 Hb_002739_060--Hb_005880_010 Hb_002609_150 Hb_002609_150 Hb_002739_060--Hb_002609_150 Hb_007253_040 Hb_007253_040 Hb_000532_130--Hb_007253_040 Hb_000532_130--Hb_002609_150 Hb_001071_060 Hb_001071_060 Hb_000197_230--Hb_001071_060 Hb_001832_210 Hb_001832_210 Hb_000197_230--Hb_001832_210 Hb_010605_010 Hb_010605_010 Hb_000197_230--Hb_010605_010 Hb_002833_020 Hb_002833_020 Hb_000197_230--Hb_002833_020 Hb_000100_210 Hb_000100_210 Hb_000197_230--Hb_000100_210 Hb_001391_100 Hb_001391_100 Hb_000197_230--Hb_001391_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.39483 4.59323 0.748178 1.944 0.395092 0.496021
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.154265 2.29786 1.06612

CAGE analysis