Hb_004648_100

Information

Type -
Description -
Location Contig4648: 69238-70585
Sequence    

Annotation

kegg
ID pop:POPTR_0014s07190g
description POPTRDRAFT_1098128; F-box family protein
nr
ID XP_012083479.1
description PREDICTED: F-box protein PP2-A13 [Jatropha curcas]
swissprot
ID Q9LEX0
description F-box protein PP2-A13 OS=Arabidopsis thaliana GN=PP2A13 PE=1 SV=1
trembl
ID A0A067JXS9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14458 PE=4 SV=1
Gene Ontology
ID GO:0005515
description f-box protein pp2-a13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43931: 69337-69722 , PASA_asmbl_43932: 69745-70003 , PASA_asmbl_43933: 70004-70448
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004648_100 0.0 - - PREDICTED: F-box protein PP2-A13 [Jatropha curcas]
2 Hb_060909_010 0.1243360874 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
3 Hb_000544_020 0.1316537726 desease resistance Gene Name: NB-ARC leucine-rich repeat containing protein, putative [Ricinus communis]
4 Hb_169620_010 0.1342488126 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105647845 [Jatropha curcas]
5 Hb_057079_020 0.1357786748 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001410_010 0.1472022277 transcription factor TF Family: RWP-RK PREDICTED: protein NLP7-like [Jatropha curcas]
7 Hb_011310_200 0.1521978341 - - grr1, plant, putative [Ricinus communis]
8 Hb_000450_180 0.153360291 - - Disease resistance protein RPS5, putative [Ricinus communis]
9 Hb_008226_100 0.1555171033 - - PREDICTED: TMV resistance protein N-like [Jatropha curcas]
10 Hb_000778_020 0.1566926542 - - PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
11 Hb_004466_070 0.1582834823 - - hypothetical protein RCOM_1447500 [Ricinus communis]
12 Hb_003371_140 0.1652081147 - - hypothetical protein POPTR_0001s23540g, partial [Populus trichocarpa]
13 Hb_002928_180 0.1659011934 - - catalase CAT1 [Manihot esculenta]
14 Hb_158696_010 0.1671675327 - - PREDICTED: putative disease resistance protein RGA4, partial [Jatropha curcas]
15 Hb_163658_010 0.1675037593 - - Disease resistance protein RPS5, putative [Ricinus communis]
16 Hb_036568_010 0.170507577 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 23 [Jatropha curcas]
17 Hb_000216_020 0.1713174784 - - PREDICTED: benzaldehyde dehydrogenase (NAD(+))-like [Jatropha curcas]
18 Hb_000984_100 0.175952807 - - receptor protein kinase, putative [Ricinus communis]
19 Hb_001248_110 0.1764953047 - - PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
20 Hb_008175_030 0.1770381382 transcription factor TF Family: TAZ PREDICTED: BTB/POZ and TAZ domain-containing protein 3 [Jatropha curcas]

Gene co-expression network

sample Hb_004648_100 Hb_004648_100 Hb_060909_010 Hb_060909_010 Hb_004648_100--Hb_060909_010 Hb_000544_020 Hb_000544_020 Hb_004648_100--Hb_000544_020 Hb_169620_010 Hb_169620_010 Hb_004648_100--Hb_169620_010 Hb_057079_020 Hb_057079_020 Hb_004648_100--Hb_057079_020 Hb_001410_010 Hb_001410_010 Hb_004648_100--Hb_001410_010 Hb_011310_200 Hb_011310_200 Hb_004648_100--Hb_011310_200 Hb_001408_150 Hb_001408_150 Hb_060909_010--Hb_001408_150 Hb_060909_010--Hb_000544_020 Hb_000233_100 Hb_000233_100 Hb_060909_010--Hb_000233_100 Hb_008226_100 Hb_008226_100 Hb_060909_010--Hb_008226_100 Hb_000532_130 Hb_000532_130 Hb_060909_010--Hb_000532_130 Hb_158696_010 Hb_158696_010 Hb_000544_020--Hb_158696_010 Hb_000984_100 Hb_000984_100 Hb_000544_020--Hb_000984_100 Hb_001248_110 Hb_001248_110 Hb_000544_020--Hb_001248_110 Hb_000544_020--Hb_000532_130 Hb_066320_010 Hb_066320_010 Hb_169620_010--Hb_066320_010 Hb_169620_010--Hb_060909_010 Hb_163658_010 Hb_163658_010 Hb_169620_010--Hb_163658_010 Hb_169620_010--Hb_000544_020 Hb_169620_010--Hb_001408_150 Hb_000778_020 Hb_000778_020 Hb_057079_020--Hb_000778_020 Hb_057079_020--Hb_001410_010 Hb_013749_060 Hb_013749_060 Hb_057079_020--Hb_013749_060 Hb_057079_020--Hb_011310_200 Hb_008175_030 Hb_008175_030 Hb_057079_020--Hb_008175_030 Hb_010253_020 Hb_010253_020 Hb_057079_020--Hb_010253_020 Hb_002218_070 Hb_002218_070 Hb_001410_010--Hb_002218_070 Hb_001410_010--Hb_011310_200 Hb_000236_110 Hb_000236_110 Hb_001410_010--Hb_000236_110 Hb_002928_180 Hb_002928_180 Hb_001410_010--Hb_002928_180 Hb_036568_010 Hb_036568_010 Hb_001410_010--Hb_036568_010 Hb_001251_060 Hb_001251_060 Hb_011310_200--Hb_001251_060 Hb_000866_370 Hb_000866_370 Hb_011310_200--Hb_000866_370 Hb_000216_020 Hb_000216_020 Hb_011310_200--Hb_000216_020 Hb_001544_080 Hb_001544_080 Hb_011310_200--Hb_001544_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0501651 1.15745 0.104973 0.426327 0.0208934 0.216524
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0510577 0.0401565 0.073884 0.484534 0.246344

CAGE analysis