Hb_001410_010

Information

Type transcription factor
Description TF Family: RWP-RK
Location Contig1410: 27950-32612
Sequence    

Annotation

kegg
ID rcu:RCOM_1312240
description transcription factor, putative
nr
ID XP_012086674.1
description PREDICTED: protein NLP7-like [Jatropha curcas]
swissprot
ID Q84TH9
description Protein NLP7 OS=Arabidopsis thaliana GN=NLP7 PE=1 SV=2
trembl
ID A0A067JMR7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20417 PE=4 SV=1
Gene Ontology
ID GO:0005515
description rwp-rk domain-containing family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_11098: 29214-29788 , PASA_asmbl_11099: 30967-31263
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001410_010 0.0 transcription factor TF Family: RWP-RK PREDICTED: protein NLP7-like [Jatropha curcas]
2 Hb_002218_070 0.1148628458 - - PREDICTED: myosin-binding protein 1 [Jatropha curcas]
3 Hb_057079_020 0.1164963331 - - conserved hypothetical protein [Ricinus communis]
4 Hb_011310_200 0.1215470411 - - grr1, plant, putative [Ricinus communis]
5 Hb_000236_110 0.1307112153 - - PREDICTED: chaperone protein dnaJ 20, chloroplastic [Jatropha curcas]
6 Hb_002928_180 0.1324620275 - - catalase CAT1 [Manihot esculenta]
7 Hb_036568_010 0.1331595468 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 23 [Jatropha curcas]
8 Hb_000778_020 0.1331891423 - - PREDICTED: salicylic acid-binding protein 2-like [Jatropha curcas]
9 Hb_000589_220 0.1357805659 desease resistance Gene Name: NB-ARC PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
10 Hb_000059_130 0.1358891075 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 1 [Jatropha curcas]
11 Hb_005880_010 0.1370244723 - - PREDICTED: uncharacterized protein LOC105646431 [Jatropha curcas]
12 Hb_008175_030 0.1375287566 transcription factor TF Family: TAZ PREDICTED: BTB/POZ and TAZ domain-containing protein 3 [Jatropha curcas]
13 Hb_013749_060 0.1402354745 - - PREDICTED: uncharacterized protein LOC105647762 [Jatropha curcas]
14 Hb_000216_020 0.1408201201 - - PREDICTED: benzaldehyde dehydrogenase (NAD(+))-like [Jatropha curcas]
15 Hb_000473_150 0.1422989445 - - PREDICTED: pullulanase 1, chloroplastic [Jatropha curcas]
16 Hb_000345_340 0.144993993 - - PREDICTED: DNA polymerase zeta catalytic subunit [Jatropha curcas]
17 Hb_004648_100 0.1472022277 - - PREDICTED: F-box protein PP2-A13 [Jatropha curcas]
18 Hb_000997_340 0.1511918189 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]
19 Hb_111985_040 0.1512608782 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 3 [Jatropha curcas]
20 Hb_000141_010 0.1529444991 - - PREDICTED: uncharacterized protein LOC105632253 [Jatropha curcas]

Gene co-expression network

sample Hb_001410_010 Hb_001410_010 Hb_002218_070 Hb_002218_070 Hb_001410_010--Hb_002218_070 Hb_057079_020 Hb_057079_020 Hb_001410_010--Hb_057079_020 Hb_011310_200 Hb_011310_200 Hb_001410_010--Hb_011310_200 Hb_000236_110 Hb_000236_110 Hb_001410_010--Hb_000236_110 Hb_002928_180 Hb_002928_180 Hb_001410_010--Hb_002928_180 Hb_036568_010 Hb_036568_010 Hb_001410_010--Hb_036568_010 Hb_117840_010 Hb_117840_010 Hb_002218_070--Hb_117840_010 Hb_002218_070--Hb_000236_110 Hb_003106_210 Hb_003106_210 Hb_002218_070--Hb_003106_210 Hb_002600_010 Hb_002600_010 Hb_002218_070--Hb_002600_010 Hb_008175_030 Hb_008175_030 Hb_002218_070--Hb_008175_030 Hb_000778_020 Hb_000778_020 Hb_057079_020--Hb_000778_020 Hb_013749_060 Hb_013749_060 Hb_057079_020--Hb_013749_060 Hb_057079_020--Hb_011310_200 Hb_057079_020--Hb_008175_030 Hb_010253_020 Hb_010253_020 Hb_057079_020--Hb_010253_020 Hb_001251_060 Hb_001251_060 Hb_011310_200--Hb_001251_060 Hb_000866_370 Hb_000866_370 Hb_011310_200--Hb_000866_370 Hb_000216_020 Hb_000216_020 Hb_011310_200--Hb_000216_020 Hb_001544_080 Hb_001544_080 Hb_011310_200--Hb_001544_080 Hb_000589_220 Hb_000589_220 Hb_000236_110--Hb_000589_220 Hb_000236_110--Hb_002928_180 Hb_000236_110--Hb_000778_020 Hb_022501_020 Hb_022501_020 Hb_000236_110--Hb_022501_020 Hb_000236_110--Hb_013749_060 Hb_000429_110 Hb_000429_110 Hb_002928_180--Hb_000429_110 Hb_002928_180--Hb_000778_020 Hb_002928_120 Hb_002928_120 Hb_002928_180--Hb_002928_120 Hb_010174_190 Hb_010174_190 Hb_002928_180--Hb_010174_190 Hb_001446_060 Hb_001446_060 Hb_036568_010--Hb_001446_060 Hb_000473_150 Hb_000473_150 Hb_036568_010--Hb_000473_150 Hb_000997_340 Hb_000997_340 Hb_036568_010--Hb_000997_340 Hb_000544_020 Hb_000544_020 Hb_036568_010--Hb_000544_020 Hb_004994_300 Hb_004994_300 Hb_036568_010--Hb_004994_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.03173 13.7883 2.16635 5.45928 1.08904 1.46721
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.432488 0.917049 0.924839 8.70619 5.86705

CAGE analysis