Hb_000866_370

Information

Type -
Description -
Location Contig866: 246323-249388
Sequence    

Annotation

kegg
ID rcu:RCOM_1615010
description synaptotagmin, putative
nr
ID XP_002511838.1
description synaptotagmin, putative [Ricinus communis]
swissprot
ID B8XCH5
description Protein QUIRKY OS=Arabidopsis thaliana GN=QKY PE=2 SV=1
trembl
ID B9RDP9
description Synaptotagmin, putative OS=Ricinus communis GN=RCOM_1615010 PE=4 SV=1
Gene Ontology
ID GO:0016021
description multiple c2 and transmembrane domain-containing protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60978: 248813-250675
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000866_370 0.0 - - synaptotagmin, putative [Ricinus communis]
2 Hb_117895_010 0.1111753991 - - hypothetical protein JCGZ_17178 [Jatropha curcas]
3 Hb_000010_350 0.1144485703 - - PREDICTED: programmed cell death protein 4-like [Jatropha curcas]
4 Hb_089100_040 0.1197376608 - - PREDICTED: uncharacterized protein LOC105638961 [Jatropha curcas]
5 Hb_002233_020 0.1210781728 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
6 Hb_011310_200 0.1217107014 - - grr1, plant, putative [Ricinus communis]
7 Hb_000645_240 0.1356338162 - - AMP dependent ligase, putative [Ricinus communis]
8 Hb_065500_030 0.1372783327 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 [Jatropha curcas]
9 Hb_000022_180 0.1374682462 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [Jatropha curcas]
10 Hb_004108_170 0.1383960306 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000216_020 0.1384990149 - - PREDICTED: benzaldehyde dehydrogenase (NAD(+))-like [Jatropha curcas]
12 Hb_003398_070 0.1401265172 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 9 [Jatropha curcas]
13 Hb_000679_210 0.1412519445 - - grr1, plant, putative [Ricinus communis]
14 Hb_009897_010 0.1421947551 desease resistance Gene Name: NB-ARC Disease resistance protein RPS5, putative [Ricinus communis]
15 Hb_003060_090 0.1439922601 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
16 Hb_001288_070 0.1445034877 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
17 Hb_002686_400 0.1468362813 - - hypothetical protein POPTR_0019s04500g [Populus trichocarpa]
18 Hb_000059_130 0.1468921346 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 1 [Jatropha curcas]
19 Hb_011861_080 0.1476492595 - - hypothetical protein JCGZ_06088 [Jatropha curcas]
20 Hb_001251_060 0.1503222452 - - aldo/keto reductase AKR [Manihot esculenta]

Gene co-expression network

sample Hb_000866_370 Hb_000866_370 Hb_117895_010 Hb_117895_010 Hb_000866_370--Hb_117895_010 Hb_000010_350 Hb_000010_350 Hb_000866_370--Hb_000010_350 Hb_089100_040 Hb_089100_040 Hb_000866_370--Hb_089100_040 Hb_002233_020 Hb_002233_020 Hb_000866_370--Hb_002233_020 Hb_011310_200 Hb_011310_200 Hb_000866_370--Hb_011310_200 Hb_000645_240 Hb_000645_240 Hb_000866_370--Hb_000645_240 Hb_001544_080 Hb_001544_080 Hb_117895_010--Hb_001544_080 Hb_117895_010--Hb_011310_200 Hb_004108_170 Hb_004108_170 Hb_117895_010--Hb_004108_170 Hb_002760_040 Hb_002760_040 Hb_117895_010--Hb_002760_040 Hb_003155_020 Hb_003155_020 Hb_117895_010--Hb_003155_020 Hb_000062_080 Hb_000062_080 Hb_000010_350--Hb_000062_080 Hb_001865_060 Hb_001865_060 Hb_000010_350--Hb_001865_060 Hb_000010_350--Hb_004108_170 Hb_000448_060 Hb_000448_060 Hb_000010_350--Hb_000448_060 Hb_000010_350--Hb_089100_040 Hb_000189_470 Hb_000189_470 Hb_089100_040--Hb_000189_470 Hb_000362_090 Hb_000362_090 Hb_089100_040--Hb_000362_090 Hb_009897_010 Hb_009897_010 Hb_089100_040--Hb_009897_010 Hb_000216_020 Hb_000216_020 Hb_089100_040--Hb_000216_020 Hb_065500_030 Hb_065500_030 Hb_089100_040--Hb_065500_030 Hb_003398_070 Hb_003398_070 Hb_002233_020--Hb_003398_070 Hb_002233_020--Hb_000010_350 Hb_002233_020--Hb_089100_040 Hb_001377_250 Hb_001377_250 Hb_002233_020--Hb_001377_250 Hb_003060_090 Hb_003060_090 Hb_002233_020--Hb_003060_090 Hb_001251_060 Hb_001251_060 Hb_011310_200--Hb_001251_060 Hb_057079_020 Hb_057079_020 Hb_011310_200--Hb_057079_020 Hb_001410_010 Hb_001410_010 Hb_011310_200--Hb_001410_010 Hb_011310_200--Hb_000216_020 Hb_011310_200--Hb_001544_080 Hb_000866_090 Hb_000866_090 Hb_000645_240--Hb_000866_090 Hb_000022_180 Hb_000022_180 Hb_000645_240--Hb_000022_180 Hb_004976_040 Hb_004976_040 Hb_000645_240--Hb_004976_040 Hb_000081_120 Hb_000081_120 Hb_000645_240--Hb_000081_120 Hb_000345_340 Hb_000345_340 Hb_000645_240--Hb_000345_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.2597 58.0712 4.75281 13.8301 8.84174 9.20818
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.2886 3.38639 6.80896 24.7397 14.1991

CAGE analysis