Hb_000189_470

Information

Type -
Description -
Location Contig189: 380216-381187
Sequence    

Annotation

kegg
ID rcu:RCOM_1428060
description DNA-damage-repair/toleration protein DRT102, putative
nr
ID XP_012089221.1
description PREDICTED: DNA-damage-repair/toleration protein DRT102 [Jatropha curcas]
swissprot
ID Q05212
description DNA-damage-repair/toleration protein DRT102 OS=Arabidopsis thaliana GN=DRT102 PE=1 SV=2
trembl
ID A0A067JI57
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23469 PE=4 SV=1
Gene Ontology
ID GO:0005634
description dna-damage-repair toleration protein drt102

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000189_470 0.0 - - PREDICTED: DNA-damage-repair/toleration protein DRT102 [Jatropha curcas]
2 Hb_089100_040 0.1192242016 - - PREDICTED: uncharacterized protein LOC105638961 [Jatropha curcas]
3 Hb_122273_020 0.1233874947 transcription factor TF Family: RWP-RK PREDICTED: protein NLP2 [Jatropha curcas]
4 Hb_002918_320 0.1304760508 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105649589 isoform X1 [Jatropha curcas]
5 Hb_002005_120 0.1379245645 - - PREDICTED: protein MEI2-like 5 [Jatropha curcas]
6 Hb_001699_150 0.1395913682 - - hypothetical protein POPTR_0009s13450g [Populus trichocarpa]
7 Hb_000413_250 0.1409226844 - - Cysteine-rich RLK 29 [Theobroma cacao]
8 Hb_004324_060 0.1418504542 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
9 Hb_000126_070 0.1424376514 - - putative leucine-rich repeat receptor-like serine/threonine-protein kinase [Gossypium arboreum]
10 Hb_000917_100 0.1427055762 - - PREDICTED: phosphoenolpyruvate carboxylase 4 [Jatropha curcas]
11 Hb_020178_050 0.147217926 desease resistance Gene Name: RPW8 PREDICTED: probable disease resistance protein At4g33300 [Jatropha curcas]
12 Hb_000866_080 0.147719361 - - PREDICTED: signal peptide peptidase-like 4 isoform X1 [Jatropha curcas]
13 Hb_002471_020 0.149896696 - - PREDICTED: 65-kDa microtubule-associated protein 6-like [Jatropha curcas]
14 Hb_000362_090 0.1519667109 - - PREDICTED: uncharacterized protein LOC105635736 isoform X1 [Jatropha curcas]
15 Hb_000922_220 0.1528360328 - - PREDICTED: serine/threonine-protein kinase ATM-like [Jatropha curcas]
16 Hb_065500_030 0.1532470443 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 [Jatropha curcas]
17 Hb_000613_220 0.1533136182 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
18 Hb_000216_020 0.1543506144 - - PREDICTED: benzaldehyde dehydrogenase (NAD(+))-like [Jatropha curcas]
19 Hb_014720_030 0.1546211552 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0012s08280g [Populus trichocarpa]
20 Hb_000133_090 0.1548840203 - - PREDICTED: uncharacterized protein LOC105629320 [Jatropha curcas]

Gene co-expression network

sample Hb_000189_470 Hb_000189_470 Hb_089100_040 Hb_089100_040 Hb_000189_470--Hb_089100_040 Hb_122273_020 Hb_122273_020 Hb_000189_470--Hb_122273_020 Hb_002918_320 Hb_002918_320 Hb_000189_470--Hb_002918_320 Hb_002005_120 Hb_002005_120 Hb_000189_470--Hb_002005_120 Hb_001699_150 Hb_001699_150 Hb_000189_470--Hb_001699_150 Hb_000413_250 Hb_000413_250 Hb_000189_470--Hb_000413_250 Hb_000866_370 Hb_000866_370 Hb_089100_040--Hb_000866_370 Hb_000362_090 Hb_000362_090 Hb_089100_040--Hb_000362_090 Hb_009897_010 Hb_009897_010 Hb_089100_040--Hb_009897_010 Hb_000216_020 Hb_000216_020 Hb_089100_040--Hb_000216_020 Hb_065500_030 Hb_065500_030 Hb_089100_040--Hb_065500_030 Hb_001054_120 Hb_001054_120 Hb_122273_020--Hb_001054_120 Hb_014720_030 Hb_014720_030 Hb_122273_020--Hb_014720_030 Hb_000243_400 Hb_000243_400 Hb_122273_020--Hb_000243_400 Hb_122273_020--Hb_002918_320 Hb_004875_010 Hb_004875_010 Hb_122273_020--Hb_004875_010 Hb_122273_020--Hb_000413_250 Hb_008686_020 Hb_008686_020 Hb_002918_320--Hb_008686_020 Hb_002918_320--Hb_000413_250 Hb_005765_040 Hb_005765_040 Hb_002918_320--Hb_005765_040 Hb_004696_070 Hb_004696_070 Hb_002918_320--Hb_004696_070 Hb_001951_100 Hb_001951_100 Hb_002918_320--Hb_001951_100 Hb_001561_010 Hb_001561_010 Hb_002918_320--Hb_001561_010 Hb_014720_020 Hb_014720_020 Hb_002005_120--Hb_014720_020 Hb_002005_120--Hb_065500_030 Hb_000917_100 Hb_000917_100 Hb_002005_120--Hb_000917_100 Hb_003604_050 Hb_003604_050 Hb_002005_120--Hb_003604_050 Hb_002016_060 Hb_002016_060 Hb_002005_120--Hb_002016_060 Hb_003120_070 Hb_003120_070 Hb_002005_120--Hb_003120_070 Hb_001799_190 Hb_001799_190 Hb_001699_150--Hb_001799_190 Hb_004126_080 Hb_004126_080 Hb_001699_150--Hb_004126_080 Hb_148682_010 Hb_148682_010 Hb_001699_150--Hb_148682_010 Hb_001675_010 Hb_001675_010 Hb_001699_150--Hb_001675_010 Hb_001699_150--Hb_002016_060 Hb_003544_070 Hb_003544_070 Hb_001699_150--Hb_003544_070 Hb_000413_250--Hb_000243_400 Hb_000413_250--Hb_004696_070 Hb_000413_250--Hb_001951_100 Hb_000133_090 Hb_000133_090 Hb_000413_250--Hb_000133_090 Hb_000331_100 Hb_000331_100 Hb_000413_250--Hb_000331_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
42.9244 186.715 50.5604 50.9778 40.9053 32.6166
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.8595 5.45102 4.32431 96.8363 81.4387

CAGE analysis