Hb_004126_080

Information

Type -
Description -
Location Contig4126: 96068-100084
Sequence    

Annotation

kegg
ID rcu:RCOM_0936860
description 50S ribosomal protein L21, mitochondrial precursor, putative
nr
ID ADR70863.1
description mitochondrial 50S ribosomal protein L21 [Hevea brasiliensis]
swissprot
ID Q8L9A0
description 50S ribosomal protein L21, mitochondrial OS=Arabidopsis thaliana GN=RPL21M PE=2 SV=1
trembl
ID I6LNS9
description Mitochondrial 50S ribosomal protein L21 OS=Hevea brasiliensis GN=mRPL21 PE=2 SV=1
Gene Ontology
ID GO:0005840
description 50s ribosomal protein mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40838: 96105-99785 , PASA_asmbl_40840: 97667-99460 , PASA_asmbl_40841: 97832-98078
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004126_080 0.0 - - mitochondrial 50S ribosomal protein L21 [Hevea brasiliensis]
2 Hb_148682_010 0.0744084493 - - PREDICTED: uncharacterized protein LOC105630720 [Jatropha curcas]
3 Hb_001699_150 0.1011186164 - - hypothetical protein POPTR_0009s13450g [Populus trichocarpa]
4 Hb_004800_240 0.1095212368 - - PREDICTED: vam6/Vps39-like protein [Jatropha curcas]
5 Hb_001646_010 0.117736579 - - hypothetical protein JCGZ_16333 [Jatropha curcas]
6 Hb_001195_020 0.1189658292 - - PREDICTED: ornithine carbamoyltransferase, chloroplastic [Jatropha curcas]
7 Hb_159295_010 0.1249481116 - - hypothetical protein RCOM_1520720 [Ricinus communis]
8 Hb_005765_040 0.1256160289 - - transcription elongation factor s-II, putative [Ricinus communis]
9 Hb_044486_040 0.1268250518 - - PREDICTED: ion channel CASTOR-like [Malus domestica]
10 Hb_002812_010 0.1283762814 - - PREDICTED: chitin elicitor receptor kinase 1 isoform X1 [Jatropha curcas]
11 Hb_001341_160 0.1284804635 - - PREDICTED: E3 SUMO-protein ligase SIZ1 isoform X2 [Jatropha curcas]
12 Hb_000362_090 0.1285210036 - - PREDICTED: uncharacterized protein LOC105635736 isoform X1 [Jatropha curcas]
13 Hb_000866_090 0.1310884947 - - PREDICTED: U-box domain-containing protein 33-like isoform X3 [Jatropha curcas]
14 Hb_000133_090 0.1319840414 - - PREDICTED: uncharacterized protein LOC105629320 [Jatropha curcas]
15 Hb_004800_130 0.1334217015 - - hypothetical protein POPTR_0005s12580g [Populus trichocarpa]
16 Hb_007765_030 0.1360003524 - - PREDICTED: neutral ceramidase [Jatropha curcas]
17 Hb_120470_010 0.1396570062 - - PREDICTED: PAX3- and PAX7-binding protein 1 [Jatropha curcas]
18 Hb_000216_020 0.1412330267 - - PREDICTED: benzaldehyde dehydrogenase (NAD(+))-like [Jatropha curcas]
19 Hb_000613_220 0.141816016 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
20 Hb_002942_110 0.1441664523 transcription factor TF Family: ARF PREDICTED: auxin response factor 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_004126_080 Hb_004126_080 Hb_148682_010 Hb_148682_010 Hb_004126_080--Hb_148682_010 Hb_001699_150 Hb_001699_150 Hb_004126_080--Hb_001699_150 Hb_004800_240 Hb_004800_240 Hb_004126_080--Hb_004800_240 Hb_001646_010 Hb_001646_010 Hb_004126_080--Hb_001646_010 Hb_001195_020 Hb_001195_020 Hb_004126_080--Hb_001195_020 Hb_159295_010 Hb_159295_010 Hb_004126_080--Hb_159295_010 Hb_148682_010--Hb_001646_010 Hb_148682_010--Hb_004800_240 Hb_148682_010--Hb_001195_020 Hb_148682_010--Hb_001699_150 Hb_044486_040 Hb_044486_040 Hb_148682_010--Hb_044486_040 Hb_001799_190 Hb_001799_190 Hb_001699_150--Hb_001799_190 Hb_001675_010 Hb_001675_010 Hb_001699_150--Hb_001675_010 Hb_002016_060 Hb_002016_060 Hb_001699_150--Hb_002016_060 Hb_003544_070 Hb_003544_070 Hb_001699_150--Hb_003544_070 Hb_009193_110 Hb_009193_110 Hb_004800_240--Hb_009193_110 Hb_012038_010 Hb_012038_010 Hb_004800_240--Hb_012038_010 Hb_004800_240--Hb_001646_010 Hb_000334_130 Hb_000334_130 Hb_004800_240--Hb_000334_130 Hb_001646_010--Hb_044486_040 Hb_001341_160 Hb_001341_160 Hb_001646_010--Hb_001341_160 Hb_002374_210 Hb_002374_210 Hb_001646_010--Hb_002374_210 Hb_011202_030 Hb_011202_030 Hb_001646_010--Hb_011202_030 Hb_000010_420 Hb_000010_420 Hb_001646_010--Hb_000010_420 Hb_002005_030 Hb_002005_030 Hb_001646_010--Hb_002005_030 Hb_000953_040 Hb_000953_040 Hb_001195_020--Hb_000953_040 Hb_000866_090 Hb_000866_090 Hb_001195_020--Hb_000866_090 Hb_007765_030 Hb_007765_030 Hb_001195_020--Hb_007765_030 Hb_004800_130 Hb_004800_130 Hb_001195_020--Hb_004800_130 Hb_005765_040 Hb_005765_040 Hb_159295_010--Hb_005765_040 Hb_001911_010 Hb_001911_010 Hb_159295_010--Hb_001911_010 Hb_002812_010 Hb_002812_010 Hb_159295_010--Hb_002812_010 Hb_002249_050 Hb_002249_050 Hb_159295_010--Hb_002249_050 Hb_004526_010 Hb_004526_010 Hb_159295_010--Hb_004526_010 Hb_011249_060 Hb_011249_060 Hb_159295_010--Hb_011249_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.45806 12.5763 4.95764 3.79613 5.18537 3.11594
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.877938 1.41566 1.02411 8.55887 3.4169

CAGE analysis