Hb_000953_040

Information

Type -
Description -
Location Contig953: 51186-55625
Sequence    

Annotation

kegg
ID vvi:100252891
description ribosome production factor 2 homolog
nr
ID EEE64298.1
description hypothetical protein OsJ_19135 [Oryza sativa Japonica Group]
swissprot
ID Q9LUG5
description Ribosome production factor 2 homolog OS=Arabidopsis thaliana GN=At3g23620 PE=2 SV=1
trembl
ID B9FKI2
description Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_19135 PE=4 SV=1
Gene Ontology
ID GO:0004832
description ribosome production factor 2 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63458: 51344-51830
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000953_040 0.0 - - hypothetical protein OsJ_19135 [Oryza sativa Japonica Group]
2 Hb_110567_010 0.1098577069 - - PREDICTED: chaperone protein dnaJ 20, chloroplastic-like [Jatropha curcas]
3 Hb_001195_020 0.1146308201 - - PREDICTED: ornithine carbamoyltransferase, chloroplastic [Jatropha curcas]
4 Hb_002471_140 0.1299346193 - - PREDICTED: protein OBERON 3 [Jatropha curcas]
5 Hb_029622_020 0.1410731862 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001842_060 0.1451368653 desease resistance Gene Name: ABC_trans_N hypothetical protein JCGZ_10908 [Jatropha curcas]
7 Hb_005504_030 0.1454000595 - - PREDICTED: somatic embryogenesis receptor kinase 2-like [Pyrus x bretschneideri]
8 Hb_033363_010 0.1476728564 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
9 Hb_002662_090 0.1495672959 - - PREDICTED: probable inactive receptor kinase At5g67200 [Jatropha curcas]
10 Hb_004586_240 0.1507159254 - - PREDICTED: serine/threonine-protein kinase-like protein At1g28390 [Jatropha curcas]
11 Hb_000622_280 0.1569992553 - - PREDICTED: uncharacterized protein At5g41620 isoform X1 [Jatropha curcas]
12 Hb_004800_130 0.1590882682 - - hypothetical protein POPTR_0005s12580g [Populus trichocarpa]
13 Hb_000062_590 0.159761565 - - ubiquitin-protein ligase, putative [Ricinus communis]
14 Hb_000009_140 0.1613894914 transcription factor TF Family: BES1 BRASSINAZOLE-RESISTANT 1 protein, putative [Ricinus communis]
15 Hb_000866_090 0.1630240365 - - PREDICTED: U-box domain-containing protein 33-like isoform X3 [Jatropha curcas]
16 Hb_000174_140 0.1640225812 - - JHL23J11.8 [Jatropha curcas]
17 Hb_000866_140 0.1648137804 - - Rop guanine nucleotide exchange factor, putative [Ricinus communis]
18 Hb_148682_010 0.1653938766 - - PREDICTED: uncharacterized protein LOC105630720 [Jatropha curcas]
19 Hb_004032_090 0.1654649836 - - PREDICTED: protein AIG1 [Jatropha curcas]
20 Hb_001396_010 0.1663352009 transcription factor TF Family: TCP transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000953_040 Hb_000953_040 Hb_110567_010 Hb_110567_010 Hb_000953_040--Hb_110567_010 Hb_001195_020 Hb_001195_020 Hb_000953_040--Hb_001195_020 Hb_002471_140 Hb_002471_140 Hb_000953_040--Hb_002471_140 Hb_029622_020 Hb_029622_020 Hb_000953_040--Hb_029622_020 Hb_001842_060 Hb_001842_060 Hb_000953_040--Hb_001842_060 Hb_005504_030 Hb_005504_030 Hb_000953_040--Hb_005504_030 Hb_000866_140 Hb_000866_140 Hb_110567_010--Hb_000866_140 Hb_003417_030 Hb_003417_030 Hb_110567_010--Hb_003417_030 Hb_110567_010--Hb_001195_020 Hb_024714_070 Hb_024714_070 Hb_110567_010--Hb_024714_070 Hb_017914_010 Hb_017914_010 Hb_110567_010--Hb_017914_010 Hb_148682_010 Hb_148682_010 Hb_001195_020--Hb_148682_010 Hb_000866_090 Hb_000866_090 Hb_001195_020--Hb_000866_090 Hb_007765_030 Hb_007765_030 Hb_001195_020--Hb_007765_030 Hb_004800_130 Hb_004800_130 Hb_001195_020--Hb_004800_130 Hb_004126_080 Hb_004126_080 Hb_001195_020--Hb_004126_080 Hb_000345_340 Hb_000345_340 Hb_002471_140--Hb_000345_340 Hb_008667_060 Hb_008667_060 Hb_002471_140--Hb_008667_060 Hb_000059_130 Hb_000059_130 Hb_002471_140--Hb_000059_130 Hb_002471_140--Hb_000866_090 Hb_001251_060 Hb_001251_060 Hb_002471_140--Hb_001251_060 Hb_002477_120 Hb_002477_120 Hb_002471_140--Hb_002477_120 Hb_004032_090 Hb_004032_090 Hb_029622_020--Hb_004032_090 Hb_011716_050 Hb_011716_050 Hb_029622_020--Hb_011716_050 Hb_005649_010 Hb_005649_010 Hb_029622_020--Hb_005649_010 Hb_114684_010 Hb_114684_010 Hb_029622_020--Hb_114684_010 Hb_000051_030 Hb_000051_030 Hb_029622_020--Hb_000051_030 Hb_002030_170 Hb_002030_170 Hb_001842_060--Hb_002030_170 Hb_001842_060--Hb_002471_140 Hb_002662_090 Hb_002662_090 Hb_001842_060--Hb_002662_090 Hb_004631_080 Hb_004631_080 Hb_001842_060--Hb_004631_080 Hb_001842_060--Hb_000345_340 Hb_000009_140 Hb_000009_140 Hb_005504_030--Hb_000009_140 Hb_004586_240 Hb_004586_240 Hb_005504_030--Hb_004586_240 Hb_033363_010 Hb_033363_010 Hb_005504_030--Hb_033363_010 Hb_000258_090 Hb_000258_090 Hb_005504_030--Hb_000258_090 Hb_000072_020 Hb_000072_020 Hb_005504_030--Hb_000072_020 Hb_010068_070 Hb_010068_070 Hb_005504_030--Hb_010068_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.353653 4.89579 3.31556 2.25291 0.939241 0.408406
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.290656 0.857434 0.640891 4.13792 0.832163

CAGE analysis