Hb_114684_010

Information

Type -
Description -
Location Contig114684: 6712-8162
Sequence    

Annotation

kegg
ID rcu:RCOM_1000270
description Seed maturation protein PM36, putative
nr
ID XP_012084059.1
description PREDICTED: seed maturation protein PM36 [Jatropha curcas]
swissprot
ID Q9SWB6
description Probable bifunctional TENA-E protein OS=Glycine max GN=TENA_E PE=2 SV=1
trembl
ID A0A067K6K3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18980 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04438: 6103-8366
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_114684_010 0.0 - - PREDICTED: seed maturation protein PM36 [Jatropha curcas]
2 Hb_000527_140 0.1034861723 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
3 Hb_000527_070 0.1248827547 transcription factor TF Family: SNF2 PREDICTED: uncharacterized protein LOC105649495 [Jatropha curcas]
4 Hb_029622_020 0.149892849 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004032_090 0.1552558622 - - PREDICTED: protein AIG1 [Jatropha curcas]
6 Hb_004007_120 0.1610320374 - - PREDICTED: calcium-transporting ATPase 2, plasma membrane-type isoform X1 [Populus euphratica]
7 Hb_042202_020 0.1626262432 - - Eukaryotic release factor 1-3 isoform 1 [Theobroma cacao]
8 Hb_000847_020 0.1640639065 - - PREDICTED: ras-related protein RABA5b [Jatropha curcas]
9 Hb_004218_160 0.1650222212 - - NBS-LRR type disease resistance protein [Medicago truncatula]
10 Hb_001049_160 0.1664451222 - - aldose 1-epimerase, putative [Ricinus communis]
11 Hb_000005_340 0.168138952 - - PREDICTED: uncharacterized protein LOC105634028 isoform X1 [Jatropha curcas]
12 Hb_002151_100 0.1698373072 - - PREDICTED: uncharacterized protein LOC105637951 [Jatropha curcas]
13 Hb_011716_050 0.1706570478 - - serine acetyltransferase [Hevea brasiliensis]
14 Hb_000417_410 0.173076543 - - PREDICTED: protein STICHEL-like 3 isoform X2 [Jatropha curcas]
15 Hb_000345_340 0.1745474191 - - PREDICTED: DNA polymerase zeta catalytic subunit [Jatropha curcas]
16 Hb_002660_040 0.1752234757 - - PREDICTED: CASP-like protein 5A1 isoform X1 [Jatropha curcas]
17 Hb_000977_090 0.1762213818 - - hypothetical protein POPTR_0010s18550g [Populus trichocarpa]
18 Hb_002928_180 0.1766429064 - - catalase CAT1 [Manihot esculenta]
19 Hb_010174_190 0.1768702375 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR11-like [Jatropha curcas]
20 Hb_064985_010 0.1769869184 - - Leucine-rich repeat transmembrane protein kinase, putative [Theobroma cacao]

Gene co-expression network

sample Hb_114684_010 Hb_114684_010 Hb_000527_140 Hb_000527_140 Hb_114684_010--Hb_000527_140 Hb_000527_070 Hb_000527_070 Hb_114684_010--Hb_000527_070 Hb_029622_020 Hb_029622_020 Hb_114684_010--Hb_029622_020 Hb_004032_090 Hb_004032_090 Hb_114684_010--Hb_004032_090 Hb_004007_120 Hb_004007_120 Hb_114684_010--Hb_004007_120 Hb_042202_020 Hb_042202_020 Hb_114684_010--Hb_042202_020 Hb_064985_010 Hb_064985_010 Hb_000527_140--Hb_064985_010 Hb_002660_040 Hb_002660_040 Hb_000527_140--Hb_002660_040 Hb_000527_140--Hb_042202_020 Hb_001008_110 Hb_001008_110 Hb_000527_140--Hb_001008_110 Hb_000847_020 Hb_000847_020 Hb_000527_140--Hb_000847_020 Hb_000141_010 Hb_000141_010 Hb_000527_070--Hb_000141_010 Hb_000527_070--Hb_000527_140 Hb_000527_070--Hb_000847_020 Hb_000345_340 Hb_000345_340 Hb_000527_070--Hb_000345_340 Hb_073973_020 Hb_073973_020 Hb_000527_070--Hb_073973_020 Hb_029622_020--Hb_004032_090 Hb_011716_050 Hb_011716_050 Hb_029622_020--Hb_011716_050 Hb_005649_010 Hb_005649_010 Hb_029622_020--Hb_005649_010 Hb_000953_040 Hb_000953_040 Hb_029622_020--Hb_000953_040 Hb_000051_030 Hb_000051_030 Hb_029622_020--Hb_000051_030 Hb_000008_430 Hb_000008_430 Hb_004032_090--Hb_000008_430 Hb_002343_020 Hb_002343_020 Hb_004032_090--Hb_002343_020 Hb_001123_190 Hb_001123_190 Hb_004032_090--Hb_001123_190 Hb_000009_150 Hb_000009_150 Hb_004032_090--Hb_000009_150 Hb_048476_040 Hb_048476_040 Hb_004032_090--Hb_048476_040 Hb_006052_060 Hb_006052_060 Hb_004032_090--Hb_006052_060 Hb_000977_090 Hb_000977_090 Hb_004007_120--Hb_000977_090 Hb_000120_070 Hb_000120_070 Hb_004007_120--Hb_000120_070 Hb_000914_130 Hb_000914_130 Hb_004007_120--Hb_000914_130 Hb_004218_160 Hb_004218_160 Hb_004007_120--Hb_004218_160 Hb_003556_070 Hb_003556_070 Hb_004007_120--Hb_003556_070 Hb_004007_120--Hb_005649_010 Hb_033234_010 Hb_033234_010 Hb_042202_020--Hb_033234_010 Hb_001268_300 Hb_001268_300 Hb_042202_020--Hb_001268_300 Hb_042202_020--Hb_001008_110 Hb_002833_020 Hb_002833_020 Hb_042202_020--Hb_002833_020 Hb_003142_060 Hb_003142_060 Hb_042202_020--Hb_003142_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0445663 17.502 7.43149 7.93341 0.466525 1.27694
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.86377 2.52256 1.27765 14.9988 6.75295

CAGE analysis