Hb_000527_140

Information

Type transcription factor
Description TF Family: GRAS
Location Contig527: 182659-187801
Sequence    

Annotation

kegg
ID rcu:RCOM_0031770
description Chitin-inducible gibberellin-responsive protein, putative
nr
ID XP_002534218.1
description Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
swissprot
ID Q9M0M5
description Scarecrow-like protein 13 OS=Arabidopsis thaliana GN=SCL13 PE=2 SV=2
trembl
ID B9T7J9
description Chitin-inducible gibberellin-responsive protein, putative OS=Ricinus communis GN=RCOM_0031770 PE=4 SV=1
Gene Ontology
ID GO:0006351
description scarecrow-like protein 13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47043: 182455-187831
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000527_140 0.0 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
2 Hb_114684_010 0.1034861723 - - PREDICTED: seed maturation protein PM36 [Jatropha curcas]
3 Hb_064985_010 0.1095821327 - - Leucine-rich repeat transmembrane protein kinase, putative [Theobroma cacao]
4 Hb_002660_040 0.1104070695 - - PREDICTED: CASP-like protein 5A1 isoform X1 [Jatropha curcas]
5 Hb_042202_020 0.1125512094 - - Eukaryotic release factor 1-3 isoform 1 [Theobroma cacao]
6 Hb_001008_110 0.1137606779 - - -
7 Hb_000847_020 0.1155096628 - - PREDICTED: ras-related protein RABA5b [Jatropha curcas]
8 Hb_082683_010 0.1197945746 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
9 Hb_000527_070 0.1209574257 transcription factor TF Family: SNF2 PREDICTED: uncharacterized protein LOC105649495 [Jatropha curcas]
10 Hb_000417_280 0.1223772382 - - conserved hypothetical protein [Ricinus communis]
11 Hb_006594_060 0.1263138519 transcription factor TF Family: HSF PREDICTED: heat shock factor protein HSF24 [Jatropha curcas]
12 Hb_025432_010 0.1264799355 - - hypothetical protein JCGZ_21627 [Jatropha curcas]
13 Hb_001268_300 0.1285221857 - - conserved hypothetical protein [Ricinus communis]
14 Hb_003142_060 0.1289894382 - - PREDICTED: glutamate synthase 1 [NADH], chloroplastic isoform X1 [Jatropha curcas]
15 Hb_006241_010 0.1329279913 desease resistance Gene Name: NB-ARC Disease resistance protein RFL1, putative [Ricinus communis]
16 Hb_010174_190 0.1333686755 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR11-like [Jatropha curcas]
17 Hb_004218_160 0.1360391377 - - NBS-LRR type disease resistance protein [Medicago truncatula]
18 Hb_002833_020 0.1372774943 desease resistance Gene Name: LRR_4 PREDICTED: uncharacterized protein LOC105124982 [Populus euphratica]
19 Hb_001307_200 0.1437586576 - - PREDICTED: uncharacterized protein LOC105644489 [Jatropha curcas]
20 Hb_033234_010 0.1456935839 desease resistance Gene Name: LRR_8 Disease resistance protein RPP8 [Theobroma cacao]

Gene co-expression network

sample Hb_000527_140 Hb_000527_140 Hb_114684_010 Hb_114684_010 Hb_000527_140--Hb_114684_010 Hb_064985_010 Hb_064985_010 Hb_000527_140--Hb_064985_010 Hb_002660_040 Hb_002660_040 Hb_000527_140--Hb_002660_040 Hb_042202_020 Hb_042202_020 Hb_000527_140--Hb_042202_020 Hb_001008_110 Hb_001008_110 Hb_000527_140--Hb_001008_110 Hb_000847_020 Hb_000847_020 Hb_000527_140--Hb_000847_020 Hb_000527_070 Hb_000527_070 Hb_114684_010--Hb_000527_070 Hb_029622_020 Hb_029622_020 Hb_114684_010--Hb_029622_020 Hb_004032_090 Hb_004032_090 Hb_114684_010--Hb_004032_090 Hb_004007_120 Hb_004007_120 Hb_114684_010--Hb_004007_120 Hb_114684_010--Hb_042202_020 Hb_064985_010--Hb_001008_110 Hb_007894_030 Hb_007894_030 Hb_064985_010--Hb_007894_030 Hb_006634_090 Hb_006634_090 Hb_064985_010--Hb_006634_090 Hb_001636_010 Hb_001636_010 Hb_064985_010--Hb_001636_010 Hb_005649_010 Hb_005649_010 Hb_064985_010--Hb_005649_010 Hb_002660_040--Hb_064985_010 Hb_005880_010 Hb_005880_010 Hb_002660_040--Hb_005880_010 Hb_002833_020 Hb_002833_020 Hb_002660_040--Hb_002833_020 Hb_002660_040--Hb_001008_110 Hb_006241_010 Hb_006241_010 Hb_002660_040--Hb_006241_010 Hb_033234_010 Hb_033234_010 Hb_042202_020--Hb_033234_010 Hb_001268_300 Hb_001268_300 Hb_042202_020--Hb_001268_300 Hb_042202_020--Hb_001008_110 Hb_042202_020--Hb_002833_020 Hb_003142_060 Hb_003142_060 Hb_042202_020--Hb_003142_060 Hb_000417_280 Hb_000417_280 Hb_001008_110--Hb_000417_280 Hb_001008_110--Hb_002833_020 Hb_001008_110--Hb_003142_060 Hb_032717_010 Hb_032717_010 Hb_001008_110--Hb_032717_010 Hb_000024_130 Hb_000024_130 Hb_000847_020--Hb_000024_130 Hb_000847_020--Hb_064985_010 Hb_000847_020--Hb_003142_060 Hb_000847_020--Hb_000527_070 Hb_004656_010 Hb_004656_010 Hb_000847_020--Hb_004656_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.978321 37.1947 16.9093 20.6697 0.878099 1.65884
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.64699 2.40931 2.27612 41.8149 18.2233

CAGE analysis