Hb_003142_060

Information

Type -
Description -
Location Contig3142: 46746-60173
Sequence    

Annotation

kegg
ID rcu:RCOM_1579610
description glutamate synthase, putative (EC:1.4.1.14)
nr
ID XP_012090081.1
description PREDICTED: glutamate synthase 1 [NADH], chloroplastic isoform X1 [Jatropha curcas]
swissprot
ID Q03460
description Glutamate synthase [NADH], amyloplastic OS=Medicago sativa PE=1 SV=1
trembl
ID A0A067JE60
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25982 PE=4 SV=1
Gene Ontology
ID GO:0005506
description glutamate synthase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33205: 46075-60176 , PASA_asmbl_33206: 46075-48526 , PASA_asmbl_33207: 48897-49209 , PASA_asmbl_33210: 58733-59052
cDNA
(Sanger)
(ID:Location)		 021_M21.ab1: 59678-60124

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003142_060 0.0 - - PREDICTED: glutamate synthase 1 [NADH], chloroplastic isoform X1 [Jatropha curcas]
2 Hb_000003_020 0.0895589904 - - PREDICTED: uncharacterized protein LOC105631161 [Jatropha curcas]
3 Hb_000834_040 0.0904059928 - - PREDICTED: ras-related protein Rab7 [Cucumis melo]
4 Hb_003106_230 0.1041746195 transcription factor TF Family: LIM PREDICTED: LIM domain-containing protein WLIM1-like [Jatropha curcas]
5 Hb_001008_110 0.1056267841 - - -
6 Hb_042202_020 0.1163760755 - - Eukaryotic release factor 1-3 isoform 1 [Theobroma cacao]
7 Hb_000024_130 0.1223014217 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001189_100 0.1227922967 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 2-like [Jatropha curcas]
9 Hb_000085_380 0.1244838047 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001018_080 0.1251262907 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000417_280 0.1271635877 - - conserved hypothetical protein [Ricinus communis]
12 Hb_002739_040 0.1276145513 - - PREDICTED: isocitrate dehydrogenase [NADP] [Jatropha curcas]
13 Hb_011537_020 0.1281966889 - - PREDICTED: uncharacterized serine-rich protein C215.13-like [Jatropha curcas]
14 Hb_064985_010 0.1287027654 - - Leucine-rich repeat transmembrane protein kinase, putative [Theobroma cacao]
15 Hb_002307_010 0.1288266316 - - PREDICTED: uncharacterized protein LOC105632092 [Jatropha curcas]
16 Hb_000527_140 0.1289894382 transcription factor TF Family: GRAS Chitin-inducible gibberellin-responsive protein, putative [Ricinus communis]
17 Hb_004079_100 0.1290438345 - - PREDICTED: uncharacterized protein LOC105637705 [Jatropha curcas]
18 Hb_004656_010 0.1331324553 - - PREDICTED: probable calcium-binding protein CML49 [Jatropha curcas]
19 Hb_000398_140 0.1331716276 - - PREDICTED: methionine S-methyltransferase [Jatropha curcas]
20 Hb_025432_010 0.1336802923 - - hypothetical protein JCGZ_21627 [Jatropha curcas]

Gene co-expression network

sample Hb_003142_060 Hb_003142_060 Hb_000003_020 Hb_000003_020 Hb_003142_060--Hb_000003_020 Hb_000834_040 Hb_000834_040 Hb_003142_060--Hb_000834_040 Hb_003106_230 Hb_003106_230 Hb_003142_060--Hb_003106_230 Hb_001008_110 Hb_001008_110 Hb_003142_060--Hb_001008_110 Hb_042202_020 Hb_042202_020 Hb_003142_060--Hb_042202_020 Hb_000024_130 Hb_000024_130 Hb_003142_060--Hb_000024_130 Hb_002739_040 Hb_002739_040 Hb_000003_020--Hb_002739_040 Hb_004324_030 Hb_004324_030 Hb_000003_020--Hb_004324_030 Hb_004079_100 Hb_004079_100 Hb_000003_020--Hb_004079_100 Hb_000085_380 Hb_000085_380 Hb_000003_020--Hb_000085_380 Hb_000003_020--Hb_003106_230 Hb_003562_030 Hb_003562_030 Hb_000834_040--Hb_003562_030 Hb_002307_010 Hb_002307_010 Hb_000834_040--Hb_002307_010 Hb_000834_040--Hb_004324_030 Hb_042509_020 Hb_042509_020 Hb_000834_040--Hb_042509_020 Hb_000834_040--Hb_000003_020 Hb_000731_210 Hb_000731_210 Hb_003106_230--Hb_000731_210 Hb_000318_170 Hb_000318_170 Hb_003106_230--Hb_000318_170 Hb_003106_230--Hb_001008_110 Hb_003106_230--Hb_000024_130 Hb_003106_230--Hb_000085_380 Hb_000417_280 Hb_000417_280 Hb_001008_110--Hb_000417_280 Hb_002833_020 Hb_002833_020 Hb_001008_110--Hb_002833_020 Hb_064985_010 Hb_064985_010 Hb_001008_110--Hb_064985_010 Hb_032717_010 Hb_032717_010 Hb_001008_110--Hb_032717_010 Hb_001008_110--Hb_042202_020 Hb_033234_010 Hb_033234_010 Hb_042202_020--Hb_033234_010 Hb_001268_300 Hb_001268_300 Hb_042202_020--Hb_001268_300 Hb_042202_020--Hb_002833_020 Hb_000527_140 Hb_000527_140 Hb_042202_020--Hb_000527_140 Hb_000024_130--Hb_000731_210 Hb_000760_080 Hb_000760_080 Hb_000024_130--Hb_000760_080 Hb_007575_030 Hb_007575_030 Hb_000024_130--Hb_007575_030 Hb_000024_130--Hb_042202_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.99197 31.3115 26.0687 42.8192 1.61707 1.31054
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.91045 2.43529 2.39788 53.2842 22.062

CAGE analysis