Hb_003562_030

Information

Type -
Description -
Location Contig3562: 62158-64185
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36816: 62396-63271 , PASA_asmbl_36817: 63325-63769 , PASA_asmbl_36819: 64323-64855
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003562_030 0.0 - - -
2 Hb_000834_040 0.1118629423 - - PREDICTED: ras-related protein Rab7 [Cucumis melo]
3 Hb_001040_200 0.1268093504 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Jatropha curcas]
4 Hb_188281_050 0.1325482981 - - PREDICTED: solute carrier family 35 member F1-like isoform X1 [Vitis vinifera]
5 Hb_000112_050 0.1360914536 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1 [Jatropha curcas]
6 Hb_003640_010 0.1440474812 - - interferon-induced GTP-binding protein mx, putative [Ricinus communis]
7 Hb_001047_170 0.1449593231 - - PREDICTED: uncharacterized protein LOC105649981 [Jatropha curcas]
8 Hb_001189_100 0.1456316889 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 2-like [Jatropha curcas]
9 Hb_013848_030 0.1456497205 - - PREDICTED: probable aminotransferase TAT2 [Jatropha curcas]
10 Hb_001963_020 0.1468744308 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
11 Hb_003847_170 0.152869732 - - PREDICTED: trehalase isoform X1 [Jatropha curcas]
12 Hb_003142_060 0.1568466584 - - PREDICTED: glutamate synthase 1 [NADH], chloroplastic isoform X1 [Jatropha curcas]
13 Hb_003847_050 0.158155537 - - PREDICTED: aquaporin SIP1-1 [Jatropha curcas]
14 Hb_005489_120 0.15837739 - - leucine rich repeat receptor kinase, putative [Ricinus communis]
15 Hb_019026_050 0.1590229899 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002026_080 0.1592054556 desease resistance Gene Name: TIR_2 nucleoside-triphosphatase, putative [Ricinus communis]
17 Hb_164926_040 0.1624038027 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
18 Hb_000005_230 0.16266852 - - hypothetical protein POPTR_0009s01160g [Populus trichocarpa]
19 Hb_001470_040 0.1633233964 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 3 [Jatropha curcas]
20 Hb_022250_160 0.1634002084 - - respiratory burst oxidase A [Manihot esculenta]

Gene co-expression network

sample Hb_003562_030 Hb_003562_030 Hb_000834_040 Hb_000834_040 Hb_003562_030--Hb_000834_040 Hb_001040_200 Hb_001040_200 Hb_003562_030--Hb_001040_200 Hb_188281_050 Hb_188281_050 Hb_003562_030--Hb_188281_050 Hb_000112_050 Hb_000112_050 Hb_003562_030--Hb_000112_050 Hb_003640_010 Hb_003640_010 Hb_003562_030--Hb_003640_010 Hb_001047_170 Hb_001047_170 Hb_003562_030--Hb_001047_170 Hb_003142_060 Hb_003142_060 Hb_000834_040--Hb_003142_060 Hb_002307_010 Hb_002307_010 Hb_000834_040--Hb_002307_010 Hb_004324_030 Hb_004324_030 Hb_000834_040--Hb_004324_030 Hb_042509_020 Hb_042509_020 Hb_000834_040--Hb_042509_020 Hb_000003_020 Hb_000003_020 Hb_000834_040--Hb_000003_020 Hb_000594_160 Hb_000594_160 Hb_001040_200--Hb_000594_160 Hb_022250_160 Hb_022250_160 Hb_001040_200--Hb_022250_160 Hb_007386_030 Hb_007386_030 Hb_001040_200--Hb_007386_030 Hb_004282_010 Hb_004282_010 Hb_001040_200--Hb_004282_010 Hb_004079_100 Hb_004079_100 Hb_001040_200--Hb_004079_100 Hb_002448_020 Hb_002448_020 Hb_001040_200--Hb_002448_020 Hb_013848_030 Hb_013848_030 Hb_188281_050--Hb_013848_030 Hb_188281_050--Hb_000112_050 Hb_188281_050--Hb_001040_200 Hb_003085_080 Hb_003085_080 Hb_188281_050--Hb_003085_080 Hb_001493_020 Hb_001493_020 Hb_188281_050--Hb_001493_020 Hb_001114_120 Hb_001114_120 Hb_000112_050--Hb_001114_120 Hb_003847_050 Hb_003847_050 Hb_000112_050--Hb_003847_050 Hb_001568_010 Hb_001568_010 Hb_000112_050--Hb_001568_010 Hb_000203_080 Hb_000203_080 Hb_000112_050--Hb_000203_080 Hb_000112_050--Hb_001040_200 Hb_000112_050--Hb_002448_020 Hb_003640_010--Hb_013848_030 Hb_000120_880 Hb_000120_880 Hb_003640_010--Hb_000120_880 Hb_003640_010--Hb_003085_080 Hb_000445_030 Hb_000445_030 Hb_003640_010--Hb_000445_030 Hb_003640_010--Hb_002448_020 Hb_002622_010 Hb_002622_010 Hb_003640_010--Hb_002622_010 Hb_002301_110 Hb_002301_110 Hb_001047_170--Hb_002301_110 Hb_001047_170--Hb_001568_010 Hb_002025_380 Hb_002025_380 Hb_001047_170--Hb_002025_380 Hb_019026_050 Hb_019026_050 Hb_001047_170--Hb_019026_050 Hb_001047_170--Hb_001040_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.231299 3.01635 3.39899 8.17095 0.128932 0.209844
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.135915 0.756418 12.5216 3.43533

CAGE analysis