Hb_001493_020

Information

Type -
Description -
Location Contig1493: 30905-42050
Sequence    

Annotation

kegg
ID fve:101300367
description protein STRUBBELIG-RECEPTOR FAMILY 6-like
nr
ID AKE50599.1
description leucine-rich repeat receptor-like protein kinase [Manihot esculenta]
swissprot
ID Q9C8M9
description Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana GN=SRF6 PE=1 SV=1
trembl
ID A0A067L933
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24613 PE=4 SV=1
Gene Ontology
ID GO:0016021
description protein strubbelig-receptor family 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12425: 31032-38473 , PASA_asmbl_12426: 31367-31701 , PASA_asmbl_12427: 38610-42048
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001493_020 0.0 - - leucine-rich repeat receptor-like protein kinase [Manihot esculenta]
2 Hb_029977_010 0.1177075325 - - catalytic, putative [Ricinus communis]
3 Hb_000793_040 0.1244288055 - - PREDICTED: transcription factor LHW [Jatropha curcas]
4 Hb_000215_250 0.1262696482 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
5 Hb_000317_220 0.135189278 - - conserved hypothetical protein [Ricinus communis]
6 Hb_188281_050 0.1361613247 - - PREDICTED: solute carrier family 35 member F1-like isoform X1 [Vitis vinifera]
7 Hb_020378_010 0.1372741845 - - PREDICTED: acyl-CoA--sterol O-acyltransferase 1 [Jatropha curcas]
8 Hb_001963_020 0.1470052368 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
9 Hb_002026_080 0.1485732954 desease resistance Gene Name: TIR_2 nucleoside-triphosphatase, putative [Ricinus communis]
10 Hb_000003_510 0.1486400338 - - PREDICTED: uncharacterized protein LOC105631555 [Jatropha curcas]
11 Hb_003847_170 0.1522493627 - - PREDICTED: trehalase isoform X1 [Jatropha curcas]
12 Hb_004316_030 0.1571968335 - - hypothetical protein JCGZ_23475 [Jatropha curcas]
13 Hb_002307_010 0.1573051854 - - PREDICTED: uncharacterized protein LOC105632092 [Jatropha curcas]
14 Hb_003085_080 0.1600524118 - - nucleic acid binding protein, putative [Ricinus communis]
15 Hb_001008_110 0.1638242661 - - -
16 Hb_001486_060 0.1642280249 - - PREDICTED: uncharacterized protein LOC105632622 [Jatropha curcas]
17 Hb_000834_040 0.16595677 - - PREDICTED: ras-related protein Rab7 [Cucumis melo]
18 Hb_001470_040 0.1697360022 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 3 [Jatropha curcas]
19 Hb_000112_050 0.1708829093 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1 [Jatropha curcas]
20 Hb_082683_010 0.1709762748 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_001493_020 Hb_001493_020 Hb_029977_010 Hb_029977_010 Hb_001493_020--Hb_029977_010 Hb_000793_040 Hb_000793_040 Hb_001493_020--Hb_000793_040 Hb_000215_250 Hb_000215_250 Hb_001493_020--Hb_000215_250 Hb_000317_220 Hb_000317_220 Hb_001493_020--Hb_000317_220 Hb_188281_050 Hb_188281_050 Hb_001493_020--Hb_188281_050 Hb_020378_010 Hb_020378_010 Hb_001493_020--Hb_020378_010 Hb_004316_030 Hb_004316_030 Hb_029977_010--Hb_004316_030 Hb_001564_090 Hb_001564_090 Hb_029977_010--Hb_001564_090 Hb_001021_030 Hb_001021_030 Hb_029977_010--Hb_001021_030 Hb_002026_080 Hb_002026_080 Hb_029977_010--Hb_002026_080 Hb_184942_010 Hb_184942_010 Hb_029977_010--Hb_184942_010 Hb_001486_060 Hb_001486_060 Hb_000793_040--Hb_001486_060 Hb_002928_120 Hb_002928_120 Hb_000793_040--Hb_002928_120 Hb_005288_210 Hb_005288_210 Hb_000793_040--Hb_005288_210 Hb_000793_040--Hb_020378_010 Hb_002420_010 Hb_002420_010 Hb_000793_040--Hb_002420_010 Hb_000215_250--Hb_002420_010 Hb_002811_020 Hb_002811_020 Hb_000215_250--Hb_002811_020 Hb_013848_030 Hb_013848_030 Hb_000215_250--Hb_013848_030 Hb_003092_050 Hb_003092_050 Hb_000215_250--Hb_003092_050 Hb_082683_010 Hb_082683_010 Hb_000215_250--Hb_082683_010 Hb_000236_050 Hb_000236_050 Hb_000317_220--Hb_000236_050 Hb_175758_010 Hb_175758_010 Hb_000317_220--Hb_175758_010 Hb_001329_110 Hb_001329_110 Hb_000317_220--Hb_001329_110 Hb_005237_040 Hb_005237_040 Hb_000317_220--Hb_005237_040 Hb_009785_010 Hb_009785_010 Hb_000317_220--Hb_009785_010 Hb_000011_120 Hb_000011_120 Hb_000317_220--Hb_000011_120 Hb_188281_050--Hb_013848_030 Hb_000112_050 Hb_000112_050 Hb_188281_050--Hb_000112_050 Hb_001040_200 Hb_001040_200 Hb_188281_050--Hb_001040_200 Hb_003562_030 Hb_003562_030 Hb_188281_050--Hb_003562_030 Hb_003085_080 Hb_003085_080 Hb_188281_050--Hb_003085_080 Hb_000020_030 Hb_000020_030 Hb_020378_010--Hb_000020_030 Hb_002003_040 Hb_002003_040 Hb_020378_010--Hb_002003_040 Hb_020378_010--Hb_001486_060 Hb_020378_010--Hb_029977_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.10726 22.3689 12.0379 31.1609 1.86421 4.43468
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.920851 0.305708 0.173295 66.9281 19.4014

CAGE analysis