Hb_029977_010

Information

Type -
Description -
Location Contig29977: 15900-21247
Sequence    

Annotation

kegg
ID rcu:RCOM_1280750
description catalytic, putative
nr
ID XP_002523791.1
description catalytic, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID A0A0D9V810
description Uncharacterized protein OS=Leersia perrieri PE=4 SV=1
Gene Ontology
ID GO:0016787
description alpha beta-hydrolases superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_31321: 16130-18655 , PASA_asmbl_31322: 17446-17575
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_029977_010 0.0 - - catalytic, putative [Ricinus communis]
2 Hb_001493_020 0.1177075325 - - leucine-rich repeat receptor-like protein kinase [Manihot esculenta]
3 Hb_004316_030 0.1365234147 - - hypothetical protein JCGZ_23475 [Jatropha curcas]
4 Hb_001564_090 0.1436726122 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001021_030 0.1463071898 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
6 Hb_002026_080 0.1530629585 desease resistance Gene Name: TIR_2 nucleoside-triphosphatase, putative [Ricinus communis]
7 Hb_184942_010 0.1558101805 - - STS14 protein precursor, putative [Ricinus communis]
8 Hb_000793_040 0.1609139612 - - PREDICTED: transcription factor LHW [Jatropha curcas]
9 Hb_000003_510 0.1611344625 - - PREDICTED: uncharacterized protein LOC105631555 [Jatropha curcas]
10 Hb_001663_120 0.1658443534 - - PREDICTED: formin-like protein 1 isoform X1 [Jatropha curcas]
11 Hb_020805_190 0.1661205631 transcription factor TF Family: HB DNA binding protein, putative [Ricinus communis]
12 Hb_001963_020 0.1679431144 desease resistance Gene Name: NB-ARC conserved hypothetical protein [Ricinus communis]
13 Hb_001470_040 0.1679965426 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 3 [Jatropha curcas]
14 Hb_020378_010 0.1689341595 - - PREDICTED: acyl-CoA--sterol O-acyltransferase 1 [Jatropha curcas]
15 Hb_001486_060 0.1698818591 - - PREDICTED: uncharacterized protein LOC105632622 [Jatropha curcas]
16 Hb_001369_620 0.1714048218 - - PREDICTED: protein EXORDIUM-like 3 [Jatropha curcas]
17 Hb_000032_560 0.1715309747 - - hypothetical protein JCGZ_15037 [Jatropha curcas]
18 Hb_001158_080 0.1727724093 - - PREDICTED: omega-hydroxypalmitate O-feruloyl transferase [Jatropha curcas]
19 Hb_000818_080 0.1741280618 - - PREDICTED: monosaccharide-sensing protein 2 [Jatropha curcas]
20 Hb_002016_020 0.1751979059 - - RALFL33, putative [Ricinus communis]

Gene co-expression network

sample Hb_029977_010 Hb_029977_010 Hb_001493_020 Hb_001493_020 Hb_029977_010--Hb_001493_020 Hb_004316_030 Hb_004316_030 Hb_029977_010--Hb_004316_030 Hb_001564_090 Hb_001564_090 Hb_029977_010--Hb_001564_090 Hb_001021_030 Hb_001021_030 Hb_029977_010--Hb_001021_030 Hb_002026_080 Hb_002026_080 Hb_029977_010--Hb_002026_080 Hb_184942_010 Hb_184942_010 Hb_029977_010--Hb_184942_010 Hb_000793_040 Hb_000793_040 Hb_001493_020--Hb_000793_040 Hb_000215_250 Hb_000215_250 Hb_001493_020--Hb_000215_250 Hb_000317_220 Hb_000317_220 Hb_001493_020--Hb_000317_220 Hb_188281_050 Hb_188281_050 Hb_001493_020--Hb_188281_050 Hb_020378_010 Hb_020378_010 Hb_001493_020--Hb_020378_010 Hb_004316_030--Hb_001021_030 Hb_000762_070 Hb_000762_070 Hb_004316_030--Hb_000762_070 Hb_004316_030--Hb_000793_040 Hb_002928_120 Hb_002928_120 Hb_004316_030--Hb_002928_120 Hb_002119_070 Hb_002119_070 Hb_004316_030--Hb_002119_070 Hb_001663_120 Hb_001663_120 Hb_001564_090--Hb_001663_120 Hb_029866_080 Hb_029866_080 Hb_001564_090--Hb_029866_080 Hb_005333_120 Hb_005333_120 Hb_001564_090--Hb_005333_120 Hb_012787_050 Hb_012787_050 Hb_001564_090--Hb_012787_050 Hb_004462_040 Hb_004462_040 Hb_001564_090--Hb_004462_040 Hb_001799_090 Hb_001799_090 Hb_001564_090--Hb_001799_090 Hb_001021_030--Hb_002928_120 Hb_003576_050 Hb_003576_050 Hb_001021_030--Hb_003576_050 Hb_009823_010 Hb_009823_010 Hb_001021_030--Hb_009823_010 Hb_000041_290 Hb_000041_290 Hb_001021_030--Hb_000041_290 Hb_002026_080--Hb_000793_040 Hb_001486_060 Hb_001486_060 Hb_002026_080--Hb_001486_060 Hb_000834_040 Hb_000834_040 Hb_002026_080--Hb_000834_040 Hb_000818_080 Hb_000818_080 Hb_002026_080--Hb_000818_080 Hb_000702_060 Hb_000702_060 Hb_002026_080--Hb_000702_060 Hb_002026_080--Hb_001493_020 Hb_172633_020 Hb_172633_020 Hb_184942_010--Hb_172633_020 Hb_000963_010 Hb_000963_010 Hb_184942_010--Hb_000963_010 Hb_150084_010 Hb_150084_010 Hb_184942_010--Hb_150084_010 Hb_001158_080 Hb_001158_080 Hb_184942_010--Hb_001158_080 Hb_002490_090 Hb_002490_090 Hb_184942_010--Hb_002490_090 Hb_002042_160 Hb_002042_160 Hb_184942_010--Hb_002042_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.664333 7.72311 2.44218 16.1485 0.877916 1.88862
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.3635 0.58886 0 27.6854 5.2341

CAGE analysis