Hb_000317_220

Information

Type -
Description -
Location Contig317: 166911-168805
Sequence    

Annotation

kegg
ID rcu:RCOM_1176610
description hypothetical protein
nr
ID XP_002518003.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SUC9
description Uncharacterized GPI-anchored protein At4g28100 OS=Arabidopsis thaliana GN=At4g28100 PE=1 SV=1
trembl
ID B9RW84
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1176610 PE=4 SV=1
Gene Ontology
ID GO:0046658
description uncharacterized gpi-anchored protein at4g28100-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33377: 166741-168958
cDNA
(Sanger)
(ID:Location)		 034_G08.ab1: 167275-168696

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000317_220 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000236_050 0.1071500798 - - phosphate transporter [Manihot esculenta]
3 Hb_175758_010 0.1158533414 - - PREDICTED: aspartic proteinase A1-like isoform X2 [Jatropha curcas]
4 Hb_001329_110 0.116387974 - - PREDICTED: uncharacterized protein LOC105642675 [Jatropha curcas]
5 Hb_005237_040 0.1181392624 - - PREDICTED: uncharacterized protein LOC105630923 [Jatropha curcas]
6 Hb_009785_010 0.119269885 - - PREDICTED: uncharacterized protein LOC105648749 [Jatropha curcas]
7 Hb_000011_120 0.1238083744 - - PREDICTED: ATPase 10, plasma membrane-type-like [Populus euphratica]
8 Hb_003085_080 0.1291115605 - - nucleic acid binding protein, putative [Ricinus communis]
9 Hb_000317_230 0.129586827 - - PREDICTED: equilibrative nucleotide transporter 3-like [Jatropha curcas]
10 Hb_003788_010 0.1301867032 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
11 Hb_001421_010 0.1303903956 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator-like APRR2 isoform X1 [Jatropha curcas]
12 Hb_010519_020 0.1332788956 - - hypothetical protein JCGZ_19028 [Jatropha curcas]
13 Hb_002307_010 0.1333587941 - - PREDICTED: uncharacterized protein LOC105632092 [Jatropha curcas]
14 Hb_184942_010 0.1351429349 - - STS14 protein precursor, putative [Ricinus communis]
15 Hb_001493_020 0.135189278 - - leucine-rich repeat receptor-like protein kinase [Manihot esculenta]
16 Hb_005211_090 0.1378270266 - - PREDICTED: aluminum-activated malate transporter 4-like isoform X1 [Jatropha curcas]
17 Hb_172633_020 0.1381854039 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g56140 [Populus euphratica]
18 Hb_001018_080 0.1402692026 - - conserved hypothetical protein [Ricinus communis]
19 Hb_007123_020 0.1413442015 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HOX3 [Jatropha curcas]
20 Hb_001514_070 0.1428174863 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_000317_220 Hb_000317_220 Hb_000236_050 Hb_000236_050 Hb_000317_220--Hb_000236_050 Hb_175758_010 Hb_175758_010 Hb_000317_220--Hb_175758_010 Hb_001329_110 Hb_001329_110 Hb_000317_220--Hb_001329_110 Hb_005237_040 Hb_005237_040 Hb_000317_220--Hb_005237_040 Hb_009785_010 Hb_009785_010 Hb_000317_220--Hb_009785_010 Hb_000011_120 Hb_000011_120 Hb_000317_220--Hb_000011_120 Hb_000236_050--Hb_005237_040 Hb_000236_050--Hb_009785_010 Hb_014037_010 Hb_014037_010 Hb_000236_050--Hb_014037_010 Hb_004884_200 Hb_004884_200 Hb_000236_050--Hb_004884_200 Hb_005211_090 Hb_005211_090 Hb_000236_050--Hb_005211_090 Hb_002391_350 Hb_002391_350 Hb_000236_050--Hb_002391_350 Hb_001421_010 Hb_001421_010 Hb_175758_010--Hb_001421_010 Hb_175758_010--Hb_001329_110 Hb_010519_020 Hb_010519_020 Hb_175758_010--Hb_010519_020 Hb_175758_010--Hb_000011_120 Hb_001318_120 Hb_001318_120 Hb_175758_010--Hb_001318_120 Hb_000840_050 Hb_000840_050 Hb_175758_010--Hb_000840_050 Hb_001329_110--Hb_000011_120 Hb_001329_110--Hb_001318_120 Hb_001329_110--Hb_000840_050 Hb_001329_110--Hb_010519_020 Hb_001329_110--Hb_001421_010 Hb_005237_040--Hb_009785_010 Hb_005237_040--Hb_014037_010 Hb_005237_040--Hb_004884_200 Hb_006711_020 Hb_006711_020 Hb_005237_040--Hb_006711_020 Hb_005237_040--Hb_002391_350 Hb_009785_010--Hb_004884_200 Hb_009785_010--Hb_014037_010 Hb_009785_010--Hb_006711_020 Hb_009785_010--Hb_002391_350 Hb_009627_040 Hb_009627_040 Hb_000011_120--Hb_009627_040 Hb_000011_120--Hb_005211_090 Hb_010839_010 Hb_010839_010 Hb_000011_120--Hb_010839_010 Hb_000011_120--Hb_001318_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.112678 19.0348 9.79633 19.0834 0.0626689 1.11994
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.29787 0.300282 0 45.4759 12.4011

CAGE analysis