Hb_000236_050

Information

Type -
Description -
Location Contig236: 48016-49620
Sequence    

Annotation

kegg
ID rcu:RCOM_1017990
description inorganic phosphate transporter, putative
nr
ID AIY53215.1
description phosphate transporter [Manihot esculenta]
swissprot
ID Q8GYF4
description Probable inorganic phosphate transporter 1-5 OS=Arabidopsis thaliana GN=PHT1-5 PE=2 SV=2
trembl
ID A0A0A1G5X4
description Phosphate transporter OS=Manihot esculenta GN=PT1;6 PE=2 SV=1
Gene Ontology
ID GO:0016021
description phosphate transporter

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24652: 48924-50273
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000236_050 0.0 - - phosphate transporter [Manihot esculenta]
2 Hb_005237_040 0.0778370058 - - PREDICTED: uncharacterized protein LOC105630923 [Jatropha curcas]
3 Hb_009785_010 0.0914130366 - - PREDICTED: uncharacterized protein LOC105648749 [Jatropha curcas]
4 Hb_014037_010 0.0947641032 - - PREDICTED: uncharacterized protein LOC105641871 [Jatropha curcas]
5 Hb_004884_200 0.098559155 - - PREDICTED: ferritin-3, chloroplastic [Jatropha curcas]
6 Hb_005211_090 0.1038364328 - - PREDICTED: aluminum-activated malate transporter 4-like isoform X1 [Jatropha curcas]
7 Hb_002391_350 0.1040234331 - - PREDICTED: uncharacterized protein LOC105647080 [Jatropha curcas]
8 Hb_000317_220 0.1071500798 - - conserved hypothetical protein [Ricinus communis]
9 Hb_006711_020 0.1115208762 - - hypothetical protein JCGZ_07258 [Jatropha curcas]
10 Hb_000934_290 0.1120066392 - - conserved hypothetical protein [Ricinus communis]
11 Hb_175758_010 0.1134993309 - - PREDICTED: aspartic proteinase A1-like isoform X2 [Jatropha curcas]
12 Hb_000034_030 0.1147940077 - - protein phosphatase 2c, putative [Ricinus communis]
13 Hb_001421_010 0.1156435024 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator-like APRR2 isoform X1 [Jatropha curcas]
14 Hb_001329_110 0.1158983742 - - PREDICTED: uncharacterized protein LOC105642675 [Jatropha curcas]
15 Hb_003987_030 0.116272828 - - PREDICTED: cytochrome P450 83B1-like [Jatropha curcas]
16 Hb_000011_120 0.117073927 - - PREDICTED: ATPase 10, plasma membrane-type-like [Populus euphratica]
17 Hb_000335_050 0.1206104597 - - PREDICTED: CASP-like protein 4A1 isoform X1 [Jatropha curcas]
18 Hb_007123_020 0.1214102141 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HOX3 [Jatropha curcas]
19 Hb_003788_010 0.121548851 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
20 Hb_002750_010 0.1229421654 transcription factor TF Family: WRKY WRKY transcription factor 15 family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_000236_050 Hb_000236_050 Hb_005237_040 Hb_005237_040 Hb_000236_050--Hb_005237_040 Hb_009785_010 Hb_009785_010 Hb_000236_050--Hb_009785_010 Hb_014037_010 Hb_014037_010 Hb_000236_050--Hb_014037_010 Hb_004884_200 Hb_004884_200 Hb_000236_050--Hb_004884_200 Hb_005211_090 Hb_005211_090 Hb_000236_050--Hb_005211_090 Hb_002391_350 Hb_002391_350 Hb_000236_050--Hb_002391_350 Hb_005237_040--Hb_009785_010 Hb_005237_040--Hb_014037_010 Hb_005237_040--Hb_004884_200 Hb_006711_020 Hb_006711_020 Hb_005237_040--Hb_006711_020 Hb_005237_040--Hb_002391_350 Hb_009785_010--Hb_004884_200 Hb_009785_010--Hb_014037_010 Hb_009785_010--Hb_006711_020 Hb_009785_010--Hb_002391_350 Hb_014037_010--Hb_004884_200 Hb_014037_010--Hb_002391_350 Hb_014037_010--Hb_005211_090 Hb_004884_200--Hb_002391_350 Hb_009627_040 Hb_009627_040 Hb_004884_200--Hb_009627_040 Hb_004884_200--Hb_006711_020 Hb_005211_090--Hb_009627_040 Hb_001514_070 Hb_001514_070 Hb_005211_090--Hb_001514_070 Hb_000011_120 Hb_000011_120 Hb_005211_090--Hb_000011_120 Hb_005211_090--Hb_002391_350 Hb_005211_090--Hb_005237_040 Hb_001329_110 Hb_001329_110 Hb_005211_090--Hb_001329_110 Hb_003807_020 Hb_003807_020 Hb_002391_350--Hb_003807_020 Hb_002391_350--Hb_009627_040 Hb_000335_050 Hb_000335_050 Hb_002391_350--Hb_000335_050 Hb_002391_350--Hb_006711_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.83093 0.664231 1.39383 0.012717 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0578 0.0682116 0 3.93539 0.715452

CAGE analysis