Hb_000335_050

Information

Type -
Description -
Location Contig335: 127698-130422
Sequence    

Annotation

kegg
ID rcu:RCOM_0850610
description hypothetical protein
nr
ID XP_012081711.1
description PREDICTED: CASP-like protein 4A1 isoform X1 [Jatropha curcas]
swissprot
ID Q9FNE8
description CASP-like protein 4A1 OS=Arabidopsis thaliana GN=At5g40300 PE=2 SV=1
trembl
ID A0A0D2NEI8
description Gossypium raimondii chromosome 1, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_001G261500 PE=4 SV=1
Gene Ontology
ID GO:0016020
description casp-like protein at5g40300

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35102: 128603-129651 , PASA_asmbl_35103: 127522-130114 , PASA_asmbl_35105: 129136-129646 , PASA_asmbl_35106: 130366-130600
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000335_050 0.0 - - PREDICTED: CASP-like protein 4A1 isoform X1 [Jatropha curcas]
2 Hb_003807_020 0.0505988249 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
3 Hb_010926_010 0.083446662 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
4 Hb_009581_050 0.0835425266 - - hypothetical protein CISIN_1g0025812mg, partial [Citrus sinensis]
5 Hb_002391_350 0.0853414041 - - PREDICTED: uncharacterized protein LOC105647080 [Jatropha curcas]
6 Hb_000579_180 0.0900162737 transcription factor TF Family: bZIP PREDICTED: ocs element-binding factor 1-like [Jatropha curcas]
7 Hb_004447_020 0.0907795033 - - carbohydrate binding protein, putative [Ricinus communis]
8 Hb_000407_080 0.0952424823 - - 1-aminocyclopropane-1-carboxylate oxidase [Hevea brasiliensis]
9 Hb_002007_140 0.0970403464 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER-like [Populus euphratica]
10 Hb_006711_020 0.0982376936 - - hypothetical protein JCGZ_07258 [Jatropha curcas]
11 Hb_000934_290 0.102031272 - - conserved hypothetical protein [Ricinus communis]
12 Hb_003788_010 0.1033537227 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
13 Hb_012807_060 0.1065650183 - - ABC transporter family protein [Hevea brasiliensis]
14 Hb_134017_010 0.1090709051 - - kinase, putative [Ricinus communis]
15 Hb_012753_200 0.1123848087 - - hypothetical protein JCGZ_20651 [Jatropha curcas]
16 Hb_005237_040 0.112812958 - - PREDICTED: uncharacterized protein LOC105630923 [Jatropha curcas]
17 Hb_001221_480 0.1138951618 - - metal ion binding protein, putative [Ricinus communis]
18 Hb_003376_200 0.114477915 transcription factor TF Family: C2H2 nucleic acid binding protein, putative [Ricinus communis]
19 Hb_111582_010 0.1174145553 - - hypothetical protein POPTR_0303s002201g, partial [Populus trichocarpa]
20 Hb_001421_010 0.11807596 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator-like APRR2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000335_050 Hb_000335_050 Hb_003807_020 Hb_003807_020 Hb_000335_050--Hb_003807_020 Hb_010926_010 Hb_010926_010 Hb_000335_050--Hb_010926_010 Hb_009581_050 Hb_009581_050 Hb_000335_050--Hb_009581_050 Hb_002391_350 Hb_002391_350 Hb_000335_050--Hb_002391_350 Hb_000579_180 Hb_000579_180 Hb_000335_050--Hb_000579_180 Hb_004447_020 Hb_004447_020 Hb_000335_050--Hb_004447_020 Hb_003807_020--Hb_000579_180 Hb_003807_020--Hb_004447_020 Hb_002007_140 Hb_002007_140 Hb_003807_020--Hb_002007_140 Hb_003807_020--Hb_009581_050 Hb_003807_020--Hb_002391_350 Hb_010926_010--Hb_000579_180 Hb_006711_020 Hb_006711_020 Hb_010926_010--Hb_006711_020 Hb_010926_010--Hb_003807_020 Hb_012807_060 Hb_012807_060 Hb_010926_010--Hb_012807_060 Hb_001421_010 Hb_001421_010 Hb_010926_010--Hb_001421_010 Hb_000407_080 Hb_000407_080 Hb_009581_050--Hb_000407_080 Hb_009581_050--Hb_012807_060 Hb_009581_050--Hb_002007_140 Hb_003430_020 Hb_003430_020 Hb_009581_050--Hb_003430_020 Hb_004884_200 Hb_004884_200 Hb_002391_350--Hb_004884_200 Hb_009627_040 Hb_009627_040 Hb_002391_350--Hb_009627_040 Hb_005237_040 Hb_005237_040 Hb_002391_350--Hb_005237_040 Hb_002391_350--Hb_006711_020 Hb_012753_200 Hb_012753_200 Hb_000579_180--Hb_012753_200 Hb_000085_230 Hb_000085_230 Hb_000579_180--Hb_000085_230 Hb_000579_180--Hb_012807_060 Hb_001894_040 Hb_001894_040 Hb_000579_180--Hb_001894_040 Hb_003376_200 Hb_003376_200 Hb_004447_020--Hb_003376_200 Hb_002805_150 Hb_002805_150 Hb_004447_020--Hb_002805_150 Hb_004447_020--Hb_000579_180 Hb_004447_020--Hb_012753_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 10.7492 2.85778 5.70422 0 0.0333445
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0433358 0 0.0632269 16.417 1.89868

CAGE analysis