Hb_000011_120

Information

Type -
Description -
Location Contig11: 212132-220072
Sequence    

Annotation

kegg
ID mdm:103405329
description ATPase 10, plasma membrane-type
nr
ID XP_011035514.1
description PREDICTED: ATPase 10, plasma membrane-type-like [Populus euphratica]
swissprot
ID Q43128
description ATPase 10, plasma membrane-type OS=Arabidopsis thaliana GN=AHA10 PE=2 SV=2
trembl
ID V7AZP1
description Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_009G260800g PE=3 SV=1
Gene Ontology
ID GO:0005773
description atpase plasma membrane-type

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02975: 212289-213876 , PASA_asmbl_02976: 213882-216107 , PASA_asmbl_02977: 216687-220387
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000011_120 0.0 - - PREDICTED: ATPase 10, plasma membrane-type-like [Populus euphratica]
2 Hb_001329_110 0.0656768334 - - PREDICTED: uncharacterized protein LOC105642675 [Jatropha curcas]
3 Hb_009627_040 0.0734351414 - - Lipase class 3-related protein, putative [Theobroma cacao]
4 Hb_175758_010 0.074233643 - - PREDICTED: aspartic proteinase A1-like isoform X2 [Jatropha curcas]
5 Hb_005211_090 0.0831608681 - - PREDICTED: aluminum-activated malate transporter 4-like isoform X1 [Jatropha curcas]
6 Hb_010839_010 0.0868906057 - - receptor-kinase, putative [Ricinus communis]
7 Hb_001318_120 0.0882029029 - - PREDICTED: uncharacterized protein LOC105642675 [Jatropha curcas]
8 Hb_010519_020 0.0937352352 - - hypothetical protein JCGZ_19028 [Jatropha curcas]
9 Hb_000917_120 0.0960487113 - - conserved hypothetical protein [Ricinus communis]
10 Hb_006120_030 0.1005427472 - - -
11 Hb_000403_110 0.100635087 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 51 [Jatropha curcas]
12 Hb_007123_020 0.1009799405 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HOX3 [Jatropha curcas]
13 Hb_029576_080 0.1045369251 - - Aspartic proteinase precursor, putative [Ricinus communis]
14 Hb_001421_010 0.1071167571 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator-like APRR2 isoform X1 [Jatropha curcas]
15 Hb_005276_220 0.1072934516 transcription factor TF Family: bHLH PREDICTED: basic helix-loop-helix protein A [Jatropha curcas]
16 Hb_001514_070 0.1093594071 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_009659_040 0.1109439385 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER [Populus euphratica]
18 Hb_009785_010 0.1136571591 - - PREDICTED: uncharacterized protein LOC105648749 [Jatropha curcas]
19 Hb_008783_020 0.1159106525 - - hypothetical protein JCGZ_21284 [Jatropha curcas]
20 Hb_004128_090 0.1160848198 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 44 [Jatropha curcas]

Gene co-expression network

sample Hb_000011_120 Hb_000011_120 Hb_001329_110 Hb_001329_110 Hb_000011_120--Hb_001329_110 Hb_009627_040 Hb_009627_040 Hb_000011_120--Hb_009627_040 Hb_175758_010 Hb_175758_010 Hb_000011_120--Hb_175758_010 Hb_005211_090 Hb_005211_090 Hb_000011_120--Hb_005211_090 Hb_010839_010 Hb_010839_010 Hb_000011_120--Hb_010839_010 Hb_001318_120 Hb_001318_120 Hb_000011_120--Hb_001318_120 Hb_001329_110--Hb_175758_010 Hb_001329_110--Hb_001318_120 Hb_000840_050 Hb_000840_050 Hb_001329_110--Hb_000840_050 Hb_010519_020 Hb_010519_020 Hb_001329_110--Hb_010519_020 Hb_001421_010 Hb_001421_010 Hb_001329_110--Hb_001421_010 Hb_009627_040--Hb_005211_090 Hb_005116_010 Hb_005116_010 Hb_009627_040--Hb_005116_010 Hb_004884_200 Hb_004884_200 Hb_009627_040--Hb_004884_200 Hb_002391_350 Hb_002391_350 Hb_009627_040--Hb_002391_350 Hb_005010_040 Hb_005010_040 Hb_009627_040--Hb_005010_040 Hb_175758_010--Hb_001421_010 Hb_175758_010--Hb_010519_020 Hb_175758_010--Hb_001318_120 Hb_175758_010--Hb_000840_050 Hb_001514_070 Hb_001514_070 Hb_005211_090--Hb_001514_070 Hb_005211_090--Hb_002391_350 Hb_005237_040 Hb_005237_040 Hb_005211_090--Hb_005237_040 Hb_005211_090--Hb_001329_110 Hb_004128_090 Hb_004128_090 Hb_010839_010--Hb_004128_090 Hb_004010_090 Hb_004010_090 Hb_010839_010--Hb_004010_090 Hb_009812_010 Hb_009812_010 Hb_010839_010--Hb_009812_010 Hb_029576_080 Hb_029576_080 Hb_010839_010--Hb_029576_080 Hb_010839_010--Hb_005116_010 Hb_001318_120--Hb_010519_020 Hb_011472_020 Hb_011472_020 Hb_001318_120--Hb_011472_020 Hb_005276_220 Hb_005276_220 Hb_001318_120--Hb_005276_220 Hb_000403_110 Hb_000403_110 Hb_001318_120--Hb_000403_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 7.87637 4.13454 6.04631 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0130318 0 19.548 5.79703

CAGE analysis