Hb_011472_020

Information

Type -
Description -
Location Contig11472: 11197-15510
Sequence    

Annotation

kegg
ID rcu:RCOM_0644420
description hypothetical protein
nr
ID XP_012087881.1
description PREDICTED: mucin-17-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JY36
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25028 PE=4 SV=1
Gene Ontology
ID GO:0009628
description atp binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04447: 11207-11565 , PASA_asmbl_04448: 11748-13986 , PASA_asmbl_04450: 14057-14163 , PASA_asmbl_04451: 14238-15048
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011472_020 0.0 - - PREDICTED: mucin-17-like [Jatropha curcas]
2 Hb_005276_220 0.0712692292 transcription factor TF Family: bHLH PREDICTED: basic helix-loop-helix protein A [Jatropha curcas]
3 Hb_010519_020 0.0728464434 - - hypothetical protein JCGZ_19028 [Jatropha curcas]
4 Hb_001318_120 0.0728673858 - - PREDICTED: uncharacterized protein LOC105642675 [Jatropha curcas]
5 Hb_001421_010 0.0832871352 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator-like APRR2 isoform X1 [Jatropha curcas]
6 Hb_000403_110 0.0845092647 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 51 [Jatropha curcas]
7 Hb_039022_020 0.0848384174 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
8 Hb_175758_010 0.09098758 - - PREDICTED: aspartic proteinase A1-like isoform X2 [Jatropha curcas]
9 Hb_005542_040 0.092466794 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 55 [Jatropha curcas]
10 Hb_166009_010 0.0993759859 - - carbonyl reductase, putative [Ricinus communis]
11 Hb_000009_130 0.1084490616 - - hypothetical protein POPTR_0007s12410g [Populus trichocarpa]
12 Hb_008783_020 0.1098634743 - - hypothetical protein JCGZ_21284 [Jatropha curcas]
13 Hb_003842_010 0.1173432142 - - receptor protein kinase, putative [Ricinus communis]
14 Hb_000840_050 0.1180733062 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Vitis vinifera]
15 Hb_187991_010 0.1196587949 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
16 Hb_001329_110 0.1198624091 - - PREDICTED: uncharacterized protein LOC105642675 [Jatropha curcas]
17 Hb_008899_030 0.1213164874 - - Lipase class 3-related protein, putative [Theobroma cacao]
18 Hb_001018_080 0.1228105187 - - conserved hypothetical protein [Ricinus communis]
19 Hb_006788_100 0.1240800975 - - PREDICTED: uncharacterized protein LOC105649919 isoform X1 [Jatropha curcas]
20 Hb_001636_010 0.1245676883 - - hypothetical protein JCGZ_01264 [Jatropha curcas]

Gene co-expression network

sample Hb_011472_020 Hb_011472_020 Hb_005276_220 Hb_005276_220 Hb_011472_020--Hb_005276_220 Hb_010519_020 Hb_010519_020 Hb_011472_020--Hb_010519_020 Hb_001318_120 Hb_001318_120 Hb_011472_020--Hb_001318_120 Hb_001421_010 Hb_001421_010 Hb_011472_020--Hb_001421_010 Hb_000403_110 Hb_000403_110 Hb_011472_020--Hb_000403_110 Hb_039022_020 Hb_039022_020 Hb_011472_020--Hb_039022_020 Hb_005276_220--Hb_000403_110 Hb_005276_220--Hb_001318_120 Hb_005542_040 Hb_005542_040 Hb_005276_220--Hb_005542_040 Hb_175758_010 Hb_175758_010 Hb_005276_220--Hb_175758_010 Hb_005276_220--Hb_010519_020 Hb_010519_020--Hb_001318_120 Hb_010519_020--Hb_175758_010 Hb_010519_020--Hb_001421_010 Hb_006711_020 Hb_006711_020 Hb_010519_020--Hb_006711_020 Hb_010519_020--Hb_000403_110 Hb_001318_120--Hb_175758_010 Hb_001329_110 Hb_001329_110 Hb_001318_120--Hb_001329_110 Hb_001318_120--Hb_000403_110 Hb_001421_010--Hb_175758_010 Hb_001421_010--Hb_000403_110 Hb_001421_010--Hb_001329_110 Hb_008783_020 Hb_008783_020 Hb_001421_010--Hb_008783_020 Hb_000403_110--Hb_008783_020 Hb_000403_110--Hb_175758_010 Hb_000096_210 Hb_000096_210 Hb_039022_020--Hb_000096_210 Hb_039022_020--Hb_005542_040 Hb_039022_020--Hb_001318_120 Hb_166009_010 Hb_166009_010 Hb_039022_020--Hb_166009_010 Hb_000840_050 Hb_000840_050 Hb_039022_020--Hb_000840_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0192336 3.55366 3.19814 2.27524 0.0160816 0.0156584
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0195065 0.0306979 0 6.52634 1.5952

CAGE analysis