Hb_005276_220

Information

Type transcription factor
Description TF Family: bHLH
Location Contig5276: 218872-223429
Sequence    

Annotation

kegg
ID tcc:TCM_004403
description BHLH-like DNA binding protein
nr
ID XP_012092262.1
description PREDICTED: basic helix-loop-helix protein A [Jatropha curcas]
swissprot
ID E3SXU4
description Basic helix-loop-helix protein A OS=Pisum sativum GN=BHLH PE=3 SV=1
trembl
ID A0A067JCD9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21943 PE=4 SV=1
Gene Ontology
ID GO:0009889
description bhlh-like dna binding protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47109: 218637-219830 , PASA_asmbl_47111: 220892-221020 , PASA_asmbl_47112: 221707-222032
cDNA
(Sanger)
(ID:Location)		 041_C14.ab1: 219138-219830 , 049_K05.ab1: 219243-219830

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005276_220 0.0 transcription factor TF Family: bHLH PREDICTED: basic helix-loop-helix protein A [Jatropha curcas]
2 Hb_011472_020 0.0712692292 - - PREDICTED: mucin-17-like [Jatropha curcas]
3 Hb_000403_110 0.0726618284 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 51 [Jatropha curcas]
4 Hb_001318_120 0.0807562119 - - PREDICTED: uncharacterized protein LOC105642675 [Jatropha curcas]
5 Hb_005542_040 0.0847078238 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 55 [Jatropha curcas]
6 Hb_175758_010 0.0852632725 - - PREDICTED: aspartic proteinase A1-like isoform X2 [Jatropha curcas]
7 Hb_010519_020 0.0856224415 - - hypothetical protein JCGZ_19028 [Jatropha curcas]
8 Hb_003842_010 0.0872931649 - - receptor protein kinase, putative [Ricinus communis]
9 Hb_008783_020 0.0884718983 - - hypothetical protein JCGZ_21284 [Jatropha curcas]
10 Hb_001421_010 0.0956507073 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator-like APRR2 isoform X1 [Jatropha curcas]
11 Hb_107809_010 0.096460991 - - JHL06P13.14 [Jatropha curcas]
12 Hb_006788_100 0.0989730233 - - PREDICTED: uncharacterized protein LOC105649919 isoform X1 [Jatropha curcas]
13 Hb_000521_360 0.1019828591 - - PREDICTED: beta-glucosidase 17-like [Jatropha curcas]
14 Hb_000203_080 0.1059610949 - - Xylem bark cysteine peptidase 3 isoform 1 [Theobroma cacao]
15 Hb_000011_120 0.1072934516 - - PREDICTED: ATPase 10, plasma membrane-type-like [Populus euphratica]
16 Hb_000108_090 0.1086297729 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
17 Hb_000163_250 0.1088272974 - - unnamed protein product [Vitis vinifera]
18 Hb_039022_020 0.1091388736 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
19 Hb_009659_040 0.1092840633 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER [Populus euphratica]
20 Hb_000840_050 0.1110227077 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Vitis vinifera]

Gene co-expression network

sample Hb_005276_220 Hb_005276_220 Hb_011472_020 Hb_011472_020 Hb_005276_220--Hb_011472_020 Hb_000403_110 Hb_000403_110 Hb_005276_220--Hb_000403_110 Hb_001318_120 Hb_001318_120 Hb_005276_220--Hb_001318_120 Hb_005542_040 Hb_005542_040 Hb_005276_220--Hb_005542_040 Hb_175758_010 Hb_175758_010 Hb_005276_220--Hb_175758_010 Hb_010519_020 Hb_010519_020 Hb_005276_220--Hb_010519_020 Hb_011472_020--Hb_010519_020 Hb_011472_020--Hb_001318_120 Hb_001421_010 Hb_001421_010 Hb_011472_020--Hb_001421_010 Hb_011472_020--Hb_000403_110 Hb_039022_020 Hb_039022_020 Hb_011472_020--Hb_039022_020 Hb_008783_020 Hb_008783_020 Hb_000403_110--Hb_008783_020 Hb_000403_110--Hb_001421_010 Hb_000403_110--Hb_010519_020 Hb_000403_110--Hb_175758_010 Hb_000403_110--Hb_001318_120 Hb_001318_120--Hb_010519_020 Hb_001318_120--Hb_175758_010 Hb_001329_110 Hb_001329_110 Hb_001318_120--Hb_001329_110 Hb_107809_010 Hb_107809_010 Hb_005542_040--Hb_107809_010 Hb_007676_040 Hb_007676_040 Hb_005542_040--Hb_007676_040 Hb_005542_040--Hb_001318_120 Hb_000108_090 Hb_000108_090 Hb_005542_040--Hb_000108_090 Hb_005542_040--Hb_011472_020 Hb_175758_010--Hb_001421_010 Hb_175758_010--Hb_001329_110 Hb_175758_010--Hb_010519_020 Hb_000011_120 Hb_000011_120 Hb_175758_010--Hb_000011_120 Hb_000840_050 Hb_000840_050 Hb_175758_010--Hb_000840_050 Hb_010519_020--Hb_001421_010 Hb_006711_020 Hb_006711_020 Hb_010519_020--Hb_006711_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0329015 5.24029 4.1557 2.95583 0.0271724 0.0429175
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.021484 0.033809 0 10.1242 3.68441

CAGE analysis