Hb_004010_090

Information

Type -
Description -
Location Contig4010: 79084-81423
Sequence    

Annotation

kegg
ID rcu:RCOM_0576160
description ATP binding protein, putative (EC:2.7.11.25)
nr
ID XP_002531799.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID Q39202
description G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 OS=Arabidopsis thaliana GN=RLK1 PE=2 SV=2
trembl
ID B9T0N0
description Serine/threonine-protein kinase OS=Ricinus communis GN=RCOM_0576160 PE=3 SV=1
Gene Ontology
ID GO:0004674
description g-type lectin s-receptor-like serine threonine-protein kinase rlk1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004010_090 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_004128_090 0.0589529737 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 44 [Jatropha curcas]
3 Hb_002475_030 0.0711597147 - - conserved hypothetical protein [Ricinus communis]
4 Hb_010839_010 0.0733901085 - - receptor-kinase, putative [Ricinus communis]
5 Hb_009150_060 0.0783787025 - - PREDICTED: cytochrome P450 CYP749A22-like [Prunus mume]
6 Hb_009812_010 0.1083149978 - - ABC transporter family protein [Hevea brasiliensis]
7 Hb_001514_070 0.1131185605 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_000836_260 0.1136655879 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
9 Hb_000834_210 0.1144168105 - - unnamed protein product [Vitis vinifera]
10 Hb_006916_020 0.1161834208 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
11 Hb_001300_140 0.1172225382 - - -
12 Hb_004586_110 0.1173177106 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
13 Hb_003085_080 0.1232217596 - - nucleic acid binding protein, putative [Ricinus communis]
14 Hb_002622_010 0.124503689 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
15 Hb_000011_120 0.1261352996 - - PREDICTED: ATPase 10, plasma membrane-type-like [Populus euphratica]
16 Hb_000203_080 0.1282497547 - - Xylem bark cysteine peptidase 3 isoform 1 [Theobroma cacao]
17 Hb_003160_050 0.1283796999 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
18 Hb_000471_010 0.1316223645 - - ATP binding protein, putative [Ricinus communis]
19 Hb_003842_010 0.13254511 - - receptor protein kinase, putative [Ricinus communis]
20 Hb_000112_050 0.1325690444 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1 [Jatropha curcas]

Gene co-expression network

sample Hb_004010_090 Hb_004010_090 Hb_004128_090 Hb_004128_090 Hb_004010_090--Hb_004128_090 Hb_002475_030 Hb_002475_030 Hb_004010_090--Hb_002475_030 Hb_010839_010 Hb_010839_010 Hb_004010_090--Hb_010839_010 Hb_009150_060 Hb_009150_060 Hb_004010_090--Hb_009150_060 Hb_009812_010 Hb_009812_010 Hb_004010_090--Hb_009812_010 Hb_001514_070 Hb_001514_070 Hb_004010_090--Hb_001514_070 Hb_004128_090--Hb_002475_030 Hb_004128_090--Hb_010839_010 Hb_004128_090--Hb_009150_060 Hb_003085_080 Hb_003085_080 Hb_004128_090--Hb_003085_080 Hb_004128_090--Hb_009812_010 Hb_002475_030--Hb_009150_060 Hb_002475_030--Hb_003085_080 Hb_003842_010 Hb_003842_010 Hb_002475_030--Hb_003842_010 Hb_002475_030--Hb_010839_010 Hb_010839_010--Hb_009812_010 Hb_029576_080 Hb_029576_080 Hb_010839_010--Hb_029576_080 Hb_000011_120 Hb_000011_120 Hb_010839_010--Hb_000011_120 Hb_005116_010 Hb_005116_010 Hb_010839_010--Hb_005116_010 Hb_001300_140 Hb_001300_140 Hb_009150_060--Hb_001300_140 Hb_000836_260 Hb_000836_260 Hb_009150_060--Hb_000836_260 Hb_011440_010 Hb_011440_010 Hb_009150_060--Hb_011440_010 Hb_009150_060--Hb_010839_010 Hb_009812_010--Hb_005116_010 Hb_004586_110 Hb_004586_110 Hb_009812_010--Hb_004586_110 Hb_010334_040 Hb_010334_040 Hb_009812_010--Hb_010334_040 Hb_000393_030 Hb_000393_030 Hb_001514_070--Hb_000393_030 Hb_002870_010 Hb_002870_010 Hb_001514_070--Hb_002870_010 Hb_005211_090 Hb_005211_090 Hb_001514_070--Hb_005211_090 Hb_001470_040 Hb_001470_040 Hb_001514_070--Hb_001470_040 Hb_001329_110 Hb_001329_110 Hb_001514_070--Hb_001329_110 Hb_000963_010 Hb_000963_010 Hb_001514_070--Hb_000963_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.153167 0.228122 0.265762 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.872595 0.28538

CAGE analysis