Hb_004586_110

Information

Type -
Description -
Location Contig4586: 120132-121445
Sequence    

Annotation

kegg
ID rcu:RCOM_1039190
description Aspartic proteinase nepenthesin-1 precursor, putative
nr
ID XP_002514026.1
description Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
swissprot
ID Q766C3
description Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1
trembl
ID B9RJV7
description Aspartic proteinase nepenthesin-1, putative OS=Ricinus communis GN=RCOM_1039190 PE=4 SV=1
Gene Ontology
ID GO:0009505
description aspartic proteinase nepenthesin-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43519: 120067-121621
cDNA
(Sanger)
(ID:Location)		 001_B04.ab1: 120067-120890 , 001_B20.ab1: 120067-120891 , 027_G22.ab1: 120067-120806 , 028_O06.ab1: 120069-120714 , 033_M06.ab1: 120068-120768 , 042_K21.ab1: 120067-120778

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004586_110 0.0 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
2 Hb_000471_010 0.0540750878 - - ATP binding protein, putative [Ricinus communis]
3 Hb_000684_490 0.0570171527 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 44 [Jatropha curcas]
4 Hb_011861_020 0.0892297382 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_06096 [Jatropha curcas]
5 Hb_009812_010 0.0956838481 - - ABC transporter family protein [Hevea brasiliensis]
6 Hb_009150_060 0.0971230755 - - PREDICTED: cytochrome P450 CYP749A22-like [Prunus mume]
7 Hb_005168_030 0.1072561702 - - unknown [Zea mays]
8 Hb_010334_040 0.1102642098 - - PREDICTED: uncharacterized protein LOC105108579 [Populus euphratica]
9 Hb_116469_010 0.1109363035 - - PREDICTED: uncharacterized protein LOC105647834 [Jatropha curcas]
10 Hb_004128_090 0.1124249138 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 44 [Jatropha curcas]
11 Hb_000005_350 0.1130305394 - - PREDICTED: uncharacterized protein LOC105634263 [Jatropha curcas]
12 Hb_150730_010 0.1137742291 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
13 Hb_004010_090 0.1173177106 - - ATP binding protein, putative [Ricinus communis]
14 Hb_006916_020 0.1197135008 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
15 Hb_000844_090 0.1203254232 - - PREDICTED: cytochrome P450 82C4-like [Jatropha curcas]
16 Hb_011440_010 0.1204902613 - - PREDICTED: metalloendoproteinase 1-like [Pyrus x bretschneideri]
17 Hb_000057_180 0.1206616905 - - hypothetical protein POPTR_0001s18200g [Populus trichocarpa]
18 Hb_010839_010 0.1223480224 - - receptor-kinase, putative [Ricinus communis]
19 Hb_002475_030 0.1226082738 - - conserved hypothetical protein [Ricinus communis]
20 Hb_106321_010 0.124859678 - - PREDICTED: probable glutathione S-transferase [Jatropha curcas]

Gene co-expression network

sample Hb_004586_110 Hb_004586_110 Hb_000471_010 Hb_000471_010 Hb_004586_110--Hb_000471_010 Hb_000684_490 Hb_000684_490 Hb_004586_110--Hb_000684_490 Hb_011861_020 Hb_011861_020 Hb_004586_110--Hb_011861_020 Hb_009812_010 Hb_009812_010 Hb_004586_110--Hb_009812_010 Hb_009150_060 Hb_009150_060 Hb_004586_110--Hb_009150_060 Hb_005168_030 Hb_005168_030 Hb_004586_110--Hb_005168_030 Hb_000471_010--Hb_000684_490 Hb_000471_010--Hb_011861_020 Hb_150730_010 Hb_150730_010 Hb_000471_010--Hb_150730_010 Hb_116469_010 Hb_116469_010 Hb_000471_010--Hb_116469_010 Hb_000005_350 Hb_000005_350 Hb_000471_010--Hb_000005_350 Hb_000684_490--Hb_011861_020 Hb_000684_490--Hb_000005_350 Hb_010334_040 Hb_010334_040 Hb_000684_490--Hb_010334_040 Hb_000684_490--Hb_116469_010 Hb_011861_020--Hb_150730_010 Hb_011861_020--Hb_000005_350 Hb_011861_020--Hb_116469_010 Hb_000057_180 Hb_000057_180 Hb_011861_020--Hb_000057_180 Hb_010839_010 Hb_010839_010 Hb_009812_010--Hb_010839_010 Hb_005116_010 Hb_005116_010 Hb_009812_010--Hb_005116_010 Hb_004128_090 Hb_004128_090 Hb_009812_010--Hb_004128_090 Hb_004010_090 Hb_004010_090 Hb_009812_010--Hb_004010_090 Hb_009812_010--Hb_010334_040 Hb_001300_140 Hb_001300_140 Hb_009150_060--Hb_001300_140 Hb_009150_060--Hb_004010_090 Hb_000836_260 Hb_000836_260 Hb_009150_060--Hb_000836_260 Hb_009150_060--Hb_004128_090 Hb_011440_010 Hb_011440_010 Hb_009150_060--Hb_011440_010 Hb_009150_060--Hb_010839_010 Hb_106321_010 Hb_106321_010 Hb_005168_030--Hb_106321_010 Hb_123560_020 Hb_123560_020 Hb_005168_030--Hb_123560_020 Hb_005168_030--Hb_011440_010 Hb_002960_010 Hb_002960_010 Hb_005168_030--Hb_002960_010 Hb_002003_030 Hb_002003_030 Hb_005168_030--Hb_002003_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0638726 22.4545 49.5271 23.3595 0.153766 0.0280389
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 139.88 29.4986

CAGE analysis