Hb_005010_040

Information

Type -
Description -
Location Contig5010: 55851-56330
Sequence    

Annotation

kegg
ID rcu:RCOM_1586760
description hypothetical protein
nr
ID XP_012068189.1
description PREDICTED: uncharacterized protein LOC105630824 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L2Z1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16005 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45849: 55958-56481
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005010_040 0.0 - - PREDICTED: uncharacterized protein LOC105630824 [Jatropha curcas]
2 Hb_005116_010 0.0787973087 transcription factor TF Family: bHLH PREDICTED: basic helix-loop-helix protein A [Jatropha curcas]
3 Hb_009627_040 0.0986574074 - - Lipase class 3-related protein, putative [Theobroma cacao]
4 Hb_006949_030 0.1035853808 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
5 Hb_010334_040 0.1042657672 - - PREDICTED: uncharacterized protein LOC105108579 [Populus euphratica]
6 Hb_000010_200 0.1097365506 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
7 Hb_002542_090 0.1104898465 - - Potassium transporter, putative [Ricinus communis]
8 Hb_001660_040 0.1109602752 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
9 Hb_001331_040 0.1113999426 - - PREDICTED: cationic peroxidase 1-like [Jatropha curcas]
10 Hb_000684_490 0.1144506821 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 44 [Jatropha curcas]
11 Hb_000381_030 0.1167368028 - - PREDICTED: aquaporin SIP1-1-like [Jatropha curcas]
12 Hb_006938_010 0.120486551 transcription factor TF Family: MYB PREDICTED: transcription factor MYB3-like [Jatropha curcas]
13 Hb_009812_010 0.1213932497 - - ABC transporter family protein [Hevea brasiliensis]
14 Hb_006788_150 0.1234803608 - - conserved hypothetical protein [Ricinus communis]
15 Hb_011063_060 0.1285422651 - - PREDICTED: endochitinase-like [Jatropha curcas]
16 Hb_004079_110 0.1287302896 - - PREDICTED: uncharacterized protein LOC100257802 [Vitis vinifera]
17 Hb_000471_010 0.1304718512 - - ATP binding protein, putative [Ricinus communis]
18 Hb_000254_040 0.1317096616 - - PREDICTED: uncharacterized protein LOC105634992 [Jatropha curcas]
19 Hb_010839_010 0.132485879 - - receptor-kinase, putative [Ricinus communis]
20 Hb_000005_350 0.1324864921 - - PREDICTED: uncharacterized protein LOC105634263 [Jatropha curcas]

Gene co-expression network

sample Hb_005010_040 Hb_005010_040 Hb_005116_010 Hb_005116_010 Hb_005010_040--Hb_005116_010 Hb_009627_040 Hb_009627_040 Hb_005010_040--Hb_009627_040 Hb_006949_030 Hb_006949_030 Hb_005010_040--Hb_006949_030 Hb_010334_040 Hb_010334_040 Hb_005010_040--Hb_010334_040 Hb_000010_200 Hb_000010_200 Hb_005010_040--Hb_000010_200 Hb_002542_090 Hb_002542_090 Hb_005010_040--Hb_002542_090 Hb_005116_010--Hb_010334_040 Hb_005116_010--Hb_009627_040 Hb_009812_010 Hb_009812_010 Hb_005116_010--Hb_009812_010 Hb_010839_010 Hb_010839_010 Hb_005116_010--Hb_010839_010 Hb_005211_090 Hb_005211_090 Hb_005116_010--Hb_005211_090 Hb_009627_040--Hb_005211_090 Hb_000011_120 Hb_000011_120 Hb_009627_040--Hb_000011_120 Hb_004884_200 Hb_004884_200 Hb_009627_040--Hb_004884_200 Hb_002391_350 Hb_002391_350 Hb_009627_040--Hb_002391_350 Hb_001331_040 Hb_001331_040 Hb_006949_030--Hb_001331_040 Hb_000381_030 Hb_000381_030 Hb_006949_030--Hb_000381_030 Hb_006938_010 Hb_006938_010 Hb_006949_030--Hb_006938_010 Hb_001621_020 Hb_001621_020 Hb_006949_030--Hb_001621_020 Hb_006949_030--Hb_000010_200 Hb_002686_390 Hb_002686_390 Hb_006949_030--Hb_002686_390 Hb_000005_350 Hb_000005_350 Hb_010334_040--Hb_000005_350 Hb_000025_740 Hb_000025_740 Hb_010334_040--Hb_000025_740 Hb_000684_490 Hb_000684_490 Hb_010334_040--Hb_000684_490 Hb_000471_010 Hb_000471_010 Hb_010334_040--Hb_000471_010 Hb_000010_200--Hb_002686_390 Hb_000010_200--Hb_000381_030 Hb_000010_200--Hb_001331_040 Hb_000010_200--Hb_004884_200 Hb_007894_260 Hb_007894_260 Hb_000010_200--Hb_007894_260 Hb_002542_090--Hb_006938_010 Hb_002928_220 Hb_002928_220 Hb_002542_090--Hb_002928_220 Hb_002542_090--Hb_001331_040 Hb_002542_090--Hb_000010_200 Hb_001856_060 Hb_001856_060 Hb_002542_090--Hb_001856_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 12.4488 9.64658 4.78396 0 0.0550826
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.189502 45.8743 7.5227

CAGE analysis