Hb_000025_740

Information

Type -
Description -
Location Contig25: 700939-703544
Sequence    

Annotation

kegg
ID tcc:TCM_001905
description TT12-2 MATE transporter
nr
ID XP_012074474.1
description PREDICTED: protein TRANSPARENT TESTA 12 isoform X1 [Jatropha curcas]
swissprot
ID Q9LYT3
description Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1
trembl
ID A0A061DSU4
description MATE efflux family protein OS=Theobroma cacao GN=TCM_001905 PE=3 SV=1
Gene Ontology
ID GO:0016020
description protein transparent testa 12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26172: 701180-701973 , PASA_asmbl_26173: 702023-703475
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000025_740 0.0 - - PREDICTED: protein TRANSPARENT TESTA 12 isoform X1 [Jatropha curcas]
2 Hb_002749_070 0.0776267862 - - PREDICTED: uncharacterized protein LOC105635941 [Jatropha curcas]
3 Hb_010334_040 0.083841567 - - PREDICTED: uncharacterized protein LOC105108579 [Populus euphratica]
4 Hb_000005_350 0.0872548572 - - PREDICTED: uncharacterized protein LOC105634263 [Jatropha curcas]
5 Hb_001104_210 0.0907647588 - - hypothetical protein JCGZ_23620 [Jatropha curcas]
6 Hb_004544_070 0.0961382567 - - unnamed protein product [Vitis vinifera]
7 Hb_164283_010 0.0961586562 - - hypothetical protein RCOM_0725500 [Ricinus communis]
8 Hb_003090_180 0.0967818973 - - PREDICTED: uncharacterized protein LOC105646674 [Jatropha curcas]
9 Hb_000589_100 0.0995939231 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
10 Hb_011145_020 0.1010244756 - - PREDICTED: metalloendoproteinase 1-like [Pyrus x bretschneideri]
11 Hb_000487_240 0.1018781143 - - PREDICTED: CYSTM1 family protein B [Cucumis melo]
12 Hb_001660_040 0.1091481683 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
13 Hb_000438_190 0.1095631399 - - PREDICTED: peroxidase 4-like [Jatropha curcas]
14 Hb_000276_030 0.1126201474 - - dimethylaniline monooxygenase, putative [Ricinus communis]
15 Hb_000580_070 0.1159961391 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
16 Hb_005211_090 0.1209782722 - - PREDICTED: aluminum-activated malate transporter 4-like isoform X1 [Jatropha curcas]
17 Hb_001377_010 0.1210999197 - - PREDICTED: transcription factor TRY-like [Jatropha curcas]
18 Hb_001922_010 0.122636257 - - PREDICTED: ABC transporter G family member 8 [Jatropha curcas]
19 Hb_002232_400 0.1227677114 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH25-like [Jatropha curcas]
20 Hb_018591_010 0.1244938682 - - kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_000025_740 Hb_000025_740 Hb_002749_070 Hb_002749_070 Hb_000025_740--Hb_002749_070 Hb_010334_040 Hb_010334_040 Hb_000025_740--Hb_010334_040 Hb_000005_350 Hb_000005_350 Hb_000025_740--Hb_000005_350 Hb_001104_210 Hb_001104_210 Hb_000025_740--Hb_001104_210 Hb_004544_070 Hb_004544_070 Hb_000025_740--Hb_004544_070 Hb_164283_010 Hb_164283_010 Hb_000025_740--Hb_164283_010 Hb_002749_070--Hb_004544_070 Hb_002749_070--Hb_164283_010 Hb_011145_020 Hb_011145_020 Hb_002749_070--Hb_011145_020 Hb_018591_010 Hb_018591_010 Hb_002749_070--Hb_018591_010 Hb_000438_190 Hb_000438_190 Hb_002749_070--Hb_000438_190 Hb_010334_040--Hb_000005_350 Hb_005116_010 Hb_005116_010 Hb_010334_040--Hb_005116_010 Hb_000684_490 Hb_000684_490 Hb_010334_040--Hb_000684_490 Hb_000471_010 Hb_000471_010 Hb_010334_040--Hb_000471_010 Hb_005010_040 Hb_005010_040 Hb_010334_040--Hb_005010_040 Hb_011861_020 Hb_011861_020 Hb_000005_350--Hb_011861_020 Hb_000589_100 Hb_000589_100 Hb_000005_350--Hb_000589_100 Hb_000005_350--Hb_000684_490 Hb_116469_010 Hb_116469_010 Hb_000005_350--Hb_116469_010 Hb_001691_060 Hb_001691_060 Hb_000005_350--Hb_001691_060 Hb_001136_030 Hb_001136_030 Hb_001104_210--Hb_001136_030 Hb_003090_180 Hb_003090_180 Hb_001104_210--Hb_003090_180 Hb_001377_010 Hb_001377_010 Hb_001104_210--Hb_001377_010 Hb_004881_060 Hb_004881_060 Hb_001104_210--Hb_004881_060 Hb_002870_010 Hb_002870_010 Hb_001104_210--Hb_002870_010 Hb_004544_070--Hb_164283_010 Hb_004544_070--Hb_018591_010 Hb_004544_070--Hb_000438_190 Hb_004544_070--Hb_011145_020 Hb_006637_040 Hb_006637_040 Hb_004544_070--Hb_006637_040 Hb_164283_010--Hb_018591_010 Hb_008418_010 Hb_008418_010 Hb_164283_010--Hb_008418_010 Hb_164283_010--Hb_006637_040 Hb_164283_010--Hb_011145_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0856126 8.14687 6.89813 11.1017 0 0.0107937
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0504225 0 0 56.5773 4.93135

CAGE analysis