Hb_004544_070

Information

Type -
Description -
Location Contig4544: 45663-47674
Sequence    

Annotation

kegg
ID rcu:RCOM_0373000
description kinase, putative (EC:2.7.10.2)
nr
ID CBI30516.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q9M345
description L-type lectin-domain containing receptor kinase IV.2 OS=Arabidopsis thaliana GN=LECRK42 PE=2 SV=1
trembl
ID A0A068V1C2
description Coffea canephora DH200=94 genomic scaffold, scaffold_82 OS=Coffea canephora GN=GSCOC_T00040698001 PE=4 SV=1
Gene Ontology
ID GO:0004674
description l-type lectin-domain containing receptor kinase -like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_43368: 45934-46218
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004544_070 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_002749_070 0.0529850855 - - PREDICTED: uncharacterized protein LOC105635941 [Jatropha curcas]
3 Hb_164283_010 0.0642309984 - - hypothetical protein RCOM_0725500 [Ricinus communis]
4 Hb_018591_010 0.0741063425 - - kinase, putative [Ricinus communis]
5 Hb_000438_190 0.0743439592 - - PREDICTED: peroxidase 4-like [Jatropha curcas]
6 Hb_011145_020 0.0788290048 - - PREDICTED: metalloendoproteinase 1-like [Pyrus x bretschneideri]
7 Hb_006637_040 0.0908006522 - - phenylalanine ammonia-lyase 2 [Manihot esculenta]
8 Hb_000025_740 0.0961382567 - - PREDICTED: protein TRANSPARENT TESTA 12 isoform X1 [Jatropha curcas]
9 Hb_002232_400 0.1004143967 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH25-like [Jatropha curcas]
10 Hb_000934_170 0.103862937 - - alcohol dehydrogenase, putative [Ricinus communis]
11 Hb_003205_030 0.1107029984 - - Pectinesterase inhibitor, putative [Ricinus communis]
12 Hb_000347_530 0.1124266619 transcription factor TF Family: MYB PREDICTED: transcription factor MYB114-like [Jatropha curcas]
13 Hb_002301_420 0.1127150676 transcription factor TF Family: bHLH hypothetical protein POPTR_0011s05320g [Populus trichocarpa]
14 Hb_001758_120 0.1168226719 - - unnamed protein product [Vitis vinifera]
15 Hb_008418_010 0.1184569142 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH93-like [Jatropha curcas]
16 Hb_159015_010 0.1205563484 - - receptor protein kinase, putative [Ricinus communis]
17 Hb_002232_370 0.1238509457 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
18 Hb_001104_210 0.1240924138 - - hypothetical protein JCGZ_23620 [Jatropha curcas]
19 Hb_148914_010 0.1245611751 - - glutathione s-transferase, putative [Ricinus communis]
20 Hb_006006_070 0.1254958655 - - UDP-glucosyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004544_070 Hb_004544_070 Hb_002749_070 Hb_002749_070 Hb_004544_070--Hb_002749_070 Hb_164283_010 Hb_164283_010 Hb_004544_070--Hb_164283_010 Hb_018591_010 Hb_018591_010 Hb_004544_070--Hb_018591_010 Hb_000438_190 Hb_000438_190 Hb_004544_070--Hb_000438_190 Hb_011145_020 Hb_011145_020 Hb_004544_070--Hb_011145_020 Hb_006637_040 Hb_006637_040 Hb_004544_070--Hb_006637_040 Hb_002749_070--Hb_164283_010 Hb_002749_070--Hb_011145_020 Hb_000025_740 Hb_000025_740 Hb_002749_070--Hb_000025_740 Hb_002749_070--Hb_018591_010 Hb_002749_070--Hb_000438_190 Hb_164283_010--Hb_018591_010 Hb_008418_010 Hb_008418_010 Hb_164283_010--Hb_008418_010 Hb_164283_010--Hb_006637_040 Hb_164283_010--Hb_011145_020 Hb_018591_010--Hb_008418_010 Hb_018591_010--Hb_006637_040 Hb_018591_010--Hb_011145_020 Hb_148914_010 Hb_148914_010 Hb_000438_190--Hb_148914_010 Hb_002232_370 Hb_002232_370 Hb_000438_190--Hb_002232_370 Hb_000438_190--Hb_011145_020 Hb_010407_120 Hb_010407_120 Hb_000438_190--Hb_010407_120 Hb_033363_080 Hb_033363_080 Hb_011145_020--Hb_033363_080 Hb_001691_060 Hb_001691_060 Hb_011145_020--Hb_001691_060 Hb_006637_040--Hb_008418_010 Hb_001758_120 Hb_001758_120 Hb_006637_040--Hb_001758_120 Hb_000797_030 Hb_000797_030 Hb_006637_040--Hb_000797_030 Hb_012368_080 Hb_012368_080 Hb_006637_040--Hb_012368_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.784843 0.713897 1.83785 0.0121756 0.0119727
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 9.13521 0.411488

CAGE analysis