Hb_148914_010

Information

Type -
Description -
Location Contig148914: 5103-9025
Sequence    

Annotation

kegg
ID rcu:RCOM_1494770
description glutathione s-transferase, putative (EC:4.4.1.5)
nr
ID XP_002516073.1
description glutathione s-transferase, putative [Ricinus communis]
swissprot
ID P49332
description Probable glutathione S-transferase parC OS=Nicotiana tabacum GN=PARC PE=2 SV=1
trembl
ID B9RQQ4
description Glutathione s-transferase, putative OS=Ricinus communis GN=RCOM_1494770 PE=4 SV=1
Gene Ontology
ID GO:0003824
description probable glutathione s-transferase parc

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12388: 7996-8842
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_148914_010 0.0 - - glutathione s-transferase, putative [Ricinus communis]
2 Hb_012796_050 0.0636740525 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
3 Hb_000438_190 0.07922212 - - PREDICTED: peroxidase 4-like [Jatropha curcas]
4 Hb_002232_370 0.0881725665 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
5 Hb_000245_140 0.0951501481 - - PREDICTED: CASP-like protein 3A1 [Jatropha curcas]
6 Hb_002965_020 0.0954670584 - - hypothetical protein JCGZ_18947 [Jatropha curcas]
7 Hb_010407_120 0.0987382844 - - PREDICTED: glutathione transferase GST 23-like [Jatropha curcas]
8 Hb_004774_060 0.0987996907 - - -
9 Hb_011145_020 0.100093776 - - PREDICTED: metalloendoproteinase 1-like [Pyrus x bretschneideri]
10 Hb_025469_040 0.1031850268 - - PREDICTED: acidic mammalian chitinase-like [Jatropha curcas]
11 Hb_033363_080 0.1071031467 - - Allene oxide cyclase 3, chloroplast precursor, putative [Ricinus communis]
12 Hb_002048_010 0.1088376561 - - unknown [Lotus japonicus]
13 Hb_000563_610 0.1164118439 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN-1 [Jatropha curcas]
14 Hb_002749_070 0.1206261012 - - PREDICTED: uncharacterized protein LOC105635941 [Jatropha curcas]
15 Hb_001691_060 0.1220513589 - - lipoxygenase, putative [Ricinus communis]
16 Hb_175968_010 0.1234725333 - - hypothetical protein JCGZ_21281 [Jatropha curcas]
17 Hb_004544_070 0.1245611751 - - unnamed protein product [Vitis vinifera]
18 Hb_004195_240 0.1248204999 - - Peroxidase 72 precursor, putative [Ricinus communis]
19 Hb_002232_400 0.1248961108 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH25-like [Jatropha curcas]
20 Hb_131864_020 0.125229684 - - PREDICTED: anthocyanidin reductase [Jatropha curcas]

Gene co-expression network

sample Hb_148914_010 Hb_148914_010 Hb_012796_050 Hb_012796_050 Hb_148914_010--Hb_012796_050 Hb_000438_190 Hb_000438_190 Hb_148914_010--Hb_000438_190 Hb_002232_370 Hb_002232_370 Hb_148914_010--Hb_002232_370 Hb_000245_140 Hb_000245_140 Hb_148914_010--Hb_000245_140 Hb_002965_020 Hb_002965_020 Hb_148914_010--Hb_002965_020 Hb_010407_120 Hb_010407_120 Hb_148914_010--Hb_010407_120 Hb_002048_010 Hb_002048_010 Hb_012796_050--Hb_002048_010 Hb_012796_050--Hb_002232_370 Hb_012796_050--Hb_000438_190 Hb_004712_080 Hb_004712_080 Hb_012796_050--Hb_004712_080 Hb_033363_080 Hb_033363_080 Hb_012796_050--Hb_033363_080 Hb_004544_070 Hb_004544_070 Hb_000438_190--Hb_004544_070 Hb_000438_190--Hb_002232_370 Hb_002749_070 Hb_002749_070 Hb_000438_190--Hb_002749_070 Hb_011145_020 Hb_011145_020 Hb_000438_190--Hb_011145_020 Hb_000438_190--Hb_010407_120 Hb_002232_370--Hb_000245_140 Hb_002232_370--Hb_002965_020 Hb_002232_400 Hb_002232_400 Hb_002232_370--Hb_002232_400 Hb_000245_140--Hb_002965_020 Hb_000976_020 Hb_000976_020 Hb_000245_140--Hb_000976_020 Hb_000648_120 Hb_000648_120 Hb_000245_140--Hb_000648_120 Hb_000563_610 Hb_000563_610 Hb_000245_140--Hb_000563_610 Hb_002965_020--Hb_002048_010 Hb_002965_020--Hb_000976_020 Hb_008080_040 Hb_008080_040 Hb_002965_020--Hb_008080_040 Hb_001357_260 Hb_001357_260 Hb_002965_020--Hb_001357_260 Hb_002917_010 Hb_002917_010 Hb_002965_020--Hb_002917_010 Hb_001544_040 Hb_001544_040 Hb_010407_120--Hb_001544_040 Hb_007532_050 Hb_007532_050 Hb_010407_120--Hb_007532_050 Hb_000933_200 Hb_000933_200 Hb_010407_120--Hb_000933_200 Hb_007527_020 Hb_007527_020 Hb_010407_120--Hb_007527_020 Hb_003253_020 Hb_003253_020 Hb_010407_120--Hb_003253_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.48333 0.532515 0.468163 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0270598 0 5.59097 0.22561

CAGE analysis