Hb_002232_400

Information

Type transcription factor
Description TF Family: bHLH
Location Contig2232: 315880-317647
Sequence    

Annotation

kegg
ID pop:POPTR_0009s08500g
description POPTRDRAFT_876975; hypothetical protein
nr
ID XP_012074541.1
description PREDICTED: transcription factor bHLH25-like [Jatropha curcas]
swissprot
ID Q9T072
description Transcription factor bHLH25 OS=Arabidopsis thaliana GN=BHLH25 PE=2 SV=2
trembl
ID A0A067KLN8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09890 PE=4 SV=1
Gene Ontology
ID GO:0032440
description transcription factor bhlh18-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23136: 316333-316752
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002232_400 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH25-like [Jatropha curcas]
2 Hb_006006_070 0.0749548002 - - UDP-glucosyltransferase, putative [Ricinus communis]
3 Hb_000441_170 0.0793190341 - - PREDICTED: uncharacterized protein LOC105636851 [Jatropha curcas]
4 Hb_076895_020 0.0874822993 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X2 [Jatropha curcas]
5 Hb_002232_370 0.0946936885 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
6 Hb_002900_070 0.0961057126 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000438_190 0.0961354493 - - PREDICTED: peroxidase 4-like [Jatropha curcas]
8 Hb_002749_070 0.0987071938 - - PREDICTED: uncharacterized protein LOC105635941 [Jatropha curcas]
9 Hb_003786_060 0.0991233006 - - PREDICTED: transmembrane protein 220 [Jatropha curcas]
10 Hb_004544_070 0.1004143967 - - unnamed protein product [Vitis vinifera]
11 Hb_000948_070 0.1045324455 - - hypothetical protein POPTR_0016s01720g [Populus trichocarpa]
12 Hb_000175_480 0.1056511423 - - hypothetical protein JCGZ_06165 [Jatropha curcas]
13 Hb_000539_080 0.107742731 - - hypothetical protein POPTR_0039s00260g, partial [Populus trichocarpa]
14 Hb_006538_050 0.1081625568 - - hypothetical protein RCOM_1308310 [Ricinus communis]
15 Hb_002110_270 0.1088307356 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH96 [Jatropha curcas]
16 Hb_000556_140 0.1131518529 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 9 [Jatropha curcas]
17 Hb_098795_010 0.1131556408 - - PREDICTED: naringenin,2-oxoglutarate 3-dioxygenase-like [Jatropha curcas]
18 Hb_000758_030 0.1206845136 transcription factor TF Family: ERF Ethylene-responsive transcription factor, putative [Ricinus communis]
19 Hb_000245_140 0.1214354186 - - PREDICTED: CASP-like protein 3A1 [Jatropha curcas]
20 Hb_000347_530 0.1216872123 transcription factor TF Family: MYB PREDICTED: transcription factor MYB114-like [Jatropha curcas]

Gene co-expression network

sample Hb_002232_400 Hb_002232_400 Hb_006006_070 Hb_006006_070 Hb_002232_400--Hb_006006_070 Hb_000441_170 Hb_000441_170 Hb_002232_400--Hb_000441_170 Hb_076895_020 Hb_076895_020 Hb_002232_400--Hb_076895_020 Hb_002232_370 Hb_002232_370 Hb_002232_400--Hb_002232_370 Hb_002900_070 Hb_002900_070 Hb_002232_400--Hb_002900_070 Hb_000438_190 Hb_000438_190 Hb_002232_400--Hb_000438_190 Hb_002110_270 Hb_002110_270 Hb_006006_070--Hb_002110_270 Hb_006006_070--Hb_076895_020 Hb_000758_030 Hb_000758_030 Hb_006006_070--Hb_000758_030 Hb_000539_080 Hb_000539_080 Hb_006006_070--Hb_000539_080 Hb_006006_070--Hb_000441_170 Hb_000441_170--Hb_002900_070 Hb_002272_160 Hb_002272_160 Hb_000441_170--Hb_002272_160 Hb_098795_010 Hb_098795_010 Hb_000441_170--Hb_098795_010 Hb_000441_170--Hb_076895_020 Hb_076895_020--Hb_000539_080 Hb_076895_020--Hb_002110_270 Hb_027141_010 Hb_027141_010 Hb_076895_020--Hb_027141_010 Hb_000984_080 Hb_000984_080 Hb_076895_020--Hb_000984_080 Hb_076895_020--Hb_000758_030 Hb_000245_140 Hb_000245_140 Hb_002232_370--Hb_000245_140 Hb_002232_370--Hb_000438_190 Hb_148914_010 Hb_148914_010 Hb_002232_370--Hb_148914_010 Hb_002965_020 Hb_002965_020 Hb_002232_370--Hb_002965_020 Hb_012796_050 Hb_012796_050 Hb_002232_370--Hb_012796_050 Hb_000948_070 Hb_000948_070 Hb_002900_070--Hb_000948_070 Hb_002900_070--Hb_006006_070 Hb_002900_070--Hb_002110_270 Hb_002900_070--Hb_076895_020 Hb_004544_070 Hb_004544_070 Hb_000438_190--Hb_004544_070 Hb_000438_190--Hb_148914_010 Hb_002749_070 Hb_002749_070 Hb_000438_190--Hb_002749_070 Hb_011145_020 Hb_011145_020 Hb_000438_190--Hb_011145_020 Hb_010407_120 Hb_010407_120 Hb_000438_190--Hb_010407_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0351387 0.749336 0.399551 0.885121 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 5.58239 0.10585

CAGE analysis