Hb_000948_070

Information

Type -
Description -
Location Contig948: 47425-48762
Sequence    

Annotation

kegg
ID pop:POPTR_0016s01720g
description POPTRDRAFT_254832; hypothetical protein
nr
ID XP_002323166.2
description hypothetical protein POPTR_0016s01720g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9IH98
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s01720g PE=4 SV=2
Gene Ontology
ID GO:0005199
description kda proline-rich

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63312: 47410-49095
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000948_070 0.0 - - hypothetical protein POPTR_0016s01720g [Populus trichocarpa]
2 Hb_000539_080 0.0696034956 - - hypothetical protein POPTR_0039s00260g, partial [Populus trichocarpa]
3 Hb_000567_310 0.0874153642 - - Miraculin precursor, putative [Ricinus communis]
4 Hb_164162_020 0.0883566988 - - PREDICTED: uncharacterized protein LOC105646964 [Jatropha curcas]
5 Hb_002900_070 0.0887629361 - - conserved hypothetical protein [Ricinus communis]
6 Hb_006538_050 0.0894543946 - - hypothetical protein RCOM_1308310 [Ricinus communis]
7 Hb_076895_020 0.0934286829 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X2 [Jatropha curcas]
8 Hb_006006_070 0.0936491227 - - UDP-glucosyltransferase, putative [Ricinus communis]
9 Hb_166813_010 0.0957466029 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
10 Hb_002475_020 0.0962965962 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 isoform X1 [Populus euphratica]
11 Hb_006538_070 0.0990372426 - - hypothetical protein JCGZ_18339 [Jatropha curcas]
12 Hb_001901_010 0.0995182143 - - PREDICTED: alpha carbonic anhydrase 7-like [Jatropha curcas]
13 Hb_000441_170 0.1011000038 - - PREDICTED: uncharacterized protein LOC105636851 [Jatropha curcas]
14 Hb_002110_270 0.1013280587 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH96 [Jatropha curcas]
15 Hb_000081_020 0.1043701034 - - PREDICTED: protein NRT1/ PTR FAMILY 1.1-like [Camelina sativa]
16 Hb_002232_400 0.1045324455 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH25-like [Jatropha curcas]
17 Hb_001971_070 0.1059595666 - - unnamed protein product [Coffea canephora]
18 Hb_001218_020 0.1060886511 transcription factor TF Family: MYB hypothetical protein POPTR_0005s17080g [Populus trichocarpa]
19 Hb_031340_030 0.1107727664 - - PREDICTED: L-type lectin-domain containing receptor kinase IV.1 [Jatropha curcas]
20 Hb_003786_060 0.112255577 - - PREDICTED: transmembrane protein 220 [Jatropha curcas]

Gene co-expression network

sample Hb_000948_070 Hb_000948_070 Hb_000539_080 Hb_000539_080 Hb_000948_070--Hb_000539_080 Hb_000567_310 Hb_000567_310 Hb_000948_070--Hb_000567_310 Hb_164162_020 Hb_164162_020 Hb_000948_070--Hb_164162_020 Hb_002900_070 Hb_002900_070 Hb_000948_070--Hb_002900_070 Hb_006538_050 Hb_006538_050 Hb_000948_070--Hb_006538_050 Hb_076895_020 Hb_076895_020 Hb_000948_070--Hb_076895_020 Hb_000539_080--Hb_076895_020 Hb_000081_020 Hb_000081_020 Hb_000539_080--Hb_000081_020 Hb_002110_270 Hb_002110_270 Hb_000539_080--Hb_002110_270 Hb_006006_070 Hb_006006_070 Hb_000539_080--Hb_006006_070 Hb_027141_010 Hb_027141_010 Hb_000539_080--Hb_027141_010 Hb_003052_070 Hb_003052_070 Hb_000567_310--Hb_003052_070 Hb_000567_310--Hb_006538_050 Hb_001328_110 Hb_001328_110 Hb_000567_310--Hb_001328_110 Hb_027288_010 Hb_027288_010 Hb_000567_310--Hb_027288_010 Hb_001173_050 Hb_001173_050 Hb_000567_310--Hb_001173_050 Hb_003786_060 Hb_003786_060 Hb_000567_310--Hb_003786_060 Hb_006538_070 Hb_006538_070 Hb_164162_020--Hb_006538_070 Hb_001901_010 Hb_001901_010 Hb_164162_020--Hb_001901_010 Hb_001971_070 Hb_001971_070 Hb_164162_020--Hb_001971_070 Hb_166813_010 Hb_166813_010 Hb_164162_020--Hb_166813_010 Hb_164162_020--Hb_006538_050 Hb_000441_170 Hb_000441_170 Hb_002900_070--Hb_000441_170 Hb_002900_070--Hb_006006_070 Hb_002232_400 Hb_002232_400 Hb_002900_070--Hb_002232_400 Hb_002900_070--Hb_002110_270 Hb_002900_070--Hb_076895_020 Hb_006538_050--Hb_003786_060 Hb_000120_710 Hb_000120_710 Hb_006538_050--Hb_000120_710 Hb_006538_050--Hb_001328_110 Hb_006538_050--Hb_003052_070 Hb_000617_340 Hb_000617_340 Hb_006538_050--Hb_000617_340 Hb_076895_020--Hb_002110_270 Hb_076895_020--Hb_006006_070 Hb_076895_020--Hb_027141_010 Hb_000984_080 Hb_000984_080 Hb_076895_020--Hb_000984_080 Hb_000758_030 Hb_000758_030 Hb_076895_020--Hb_000758_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.71289 496.609 76.5332 471.211 2.11981 0.516895
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0713265 0.0280554 0.996784 2818.91 15.1819

CAGE analysis