Hb_164162_020

Information

Type -
Description -
Location Contig164162: 6271-6675
Sequence    

Annotation

kegg
ID pop:POPTR_0013s13950g
description hypothetical protein
nr
ID XP_012088316.1
description PREDICTED: uncharacterized protein LOC105646964 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JW03
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25817 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_164162_020 0.0 - - PREDICTED: uncharacterized protein LOC105646964 [Jatropha curcas]
2 Hb_006538_070 0.0302758317 - - hypothetical protein JCGZ_18339 [Jatropha curcas]
3 Hb_001901_010 0.071457358 - - PREDICTED: alpha carbonic anhydrase 7-like [Jatropha curcas]
4 Hb_001971_070 0.0796435827 - - unnamed protein product [Coffea canephora]
5 Hb_000948_070 0.0883566988 - - hypothetical protein POPTR_0016s01720g [Populus trichocarpa]
6 Hb_166813_010 0.1069791688 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
7 Hb_006538_050 0.1090727753 - - hypothetical protein RCOM_1308310 [Ricinus communis]
8 Hb_006153_200 0.115787166 - - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [Theobroma cacao]
9 Hb_000005_270 0.1172041276 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
10 Hb_000521_340 0.1172571358 - - PREDICTED: beta-glucosidase 13-like [Jatropha curcas]
11 Hb_002999_090 0.1201224714 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004544_080 0.1208553607 - - lectin protein kinase [Populus trichocarpa]
13 Hb_003462_150 0.121909831 - - PREDICTED: chitinase 1-like [Eucalyptus grandis]
14 Hb_000120_710 0.1241350947 - - unnamed protein product [Vitis vinifera]
15 Hb_001218_020 0.1247395176 transcription factor TF Family: MYB hypothetical protein POPTR_0005s17080g [Populus trichocarpa]
16 Hb_002475_020 0.128296242 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 isoform X1 [Populus euphratica]
17 Hb_003786_060 0.1306731558 - - PREDICTED: transmembrane protein 220 [Jatropha curcas]
18 Hb_045992_010 0.1327253533 - - -
19 Hb_000539_080 0.1343526831 - - hypothetical protein POPTR_0039s00260g, partial [Populus trichocarpa]
20 Hb_001195_440 0.1354291259 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_164162_020 Hb_164162_020 Hb_006538_070 Hb_006538_070 Hb_164162_020--Hb_006538_070 Hb_001901_010 Hb_001901_010 Hb_164162_020--Hb_001901_010 Hb_001971_070 Hb_001971_070 Hb_164162_020--Hb_001971_070 Hb_000948_070 Hb_000948_070 Hb_164162_020--Hb_000948_070 Hb_166813_010 Hb_166813_010 Hb_164162_020--Hb_166813_010 Hb_006538_050 Hb_006538_050 Hb_164162_020--Hb_006538_050 Hb_006538_070--Hb_001901_010 Hb_006538_070--Hb_000948_070 Hb_006538_070--Hb_006538_050 Hb_006538_070--Hb_001971_070 Hb_000005_270 Hb_000005_270 Hb_006538_070--Hb_000005_270 Hb_002999_090 Hb_002999_090 Hb_001901_010--Hb_002999_090 Hb_001901_010--Hb_001971_070 Hb_006153_200 Hb_006153_200 Hb_001901_010--Hb_006153_200 Hb_003462_150 Hb_003462_150 Hb_001901_010--Hb_003462_150 Hb_004544_080 Hb_004544_080 Hb_001901_010--Hb_004544_080 Hb_001971_070--Hb_004544_080 Hb_001971_070--Hb_003462_150 Hb_001971_070--Hb_002999_090 Hb_000539_080 Hb_000539_080 Hb_000948_070--Hb_000539_080 Hb_000567_310 Hb_000567_310 Hb_000948_070--Hb_000567_310 Hb_002900_070 Hb_002900_070 Hb_000948_070--Hb_002900_070 Hb_000948_070--Hb_006538_050 Hb_076895_020 Hb_076895_020 Hb_000948_070--Hb_076895_020 Hb_002475_020 Hb_002475_020 Hb_166813_010--Hb_002475_020 Hb_166813_010--Hb_000948_070 Hb_000608_080 Hb_000608_080 Hb_166813_010--Hb_000608_080 Hb_000141_230 Hb_000141_230 Hb_166813_010--Hb_000141_230 Hb_166813_010--Hb_004544_080 Hb_000238_060 Hb_000238_060 Hb_166813_010--Hb_000238_060 Hb_003786_060 Hb_003786_060 Hb_006538_050--Hb_003786_060 Hb_000120_710 Hb_000120_710 Hb_006538_050--Hb_000120_710 Hb_001328_110 Hb_001328_110 Hb_006538_050--Hb_001328_110 Hb_003052_070 Hb_003052_070 Hb_006538_050--Hb_003052_070 Hb_006538_050--Hb_000567_310 Hb_000617_340 Hb_000617_340 Hb_006538_050--Hb_000617_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 2.57783 0.416241 4.73173 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 20.5169 0

CAGE analysis