Hb_000141_230

Information

Type -
Description -
Location Contig141: 296490-296879
Sequence    

Annotation

kegg
ID crb:CARUB_v10012658mg
description hypothetical protein
nr
ID XP_010493743.1
description PREDICTED: 14 kDa proline-rich protein DC2.15-like [Camelina sativa]
swissprot
ID P14009
description 14 kDa proline-rich protein DC2.15 OS=Daucus carota PE=2 SV=1
trembl
ID R0GUH5
description Uncharacterized protein OS=Capsella rubella GN=CARUB_v10012658mg PE=4 SV=1
Gene Ontology
ID GO:0005576
description 14 kda proline-rich protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000141_230 0.0 - - PREDICTED: 14 kDa proline-rich protein DC2.15-like [Camelina sativa]
2 Hb_003462_150 0.0192217823 - - PREDICTED: chitinase 1-like [Eucalyptus grandis]
3 Hb_004544_080 0.0219340307 - - lectin protein kinase [Populus trichocarpa]
4 Hb_000608_080 0.0376485842 - - hypothetical protein JCGZ_22216 [Jatropha curcas]
5 Hb_000302_060 0.0562301978 - - unnamed protein product [Vitis vinifera]
6 Hb_002999_090 0.0562826728 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002556_020 0.0592535265 - - hypothetical protein JCGZ_12588 [Jatropha curcas]
8 Hb_002475_020 0.0654662752 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 isoform X1 [Populus euphratica]
9 Hb_002204_030 0.0829144113 - - PREDICTED: uncharacterized protein LOC105764710 isoform X3 [Gossypium raimondii]
10 Hb_009515_010 0.0846079745 transcription factor TF Family: HB hypothetical protein JCGZ_15302 [Jatropha curcas]
11 Hb_000951_030 0.0939940796 - - kinase, putative [Ricinus communis]
12 Hb_001901_010 0.0967118396 - - PREDICTED: alpha carbonic anhydrase 7-like [Jatropha curcas]
13 Hb_166813_010 0.1013911503 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
14 Hb_001971_070 0.1068736973 - - unnamed protein product [Coffea canephora]
15 Hb_005228_170 0.1099924094 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
16 Hb_005218_070 0.1114898746 transcription factor TF Family: MYB PREDICTED: transcription factor RAX3 isoform X2 [Populus euphratica]
17 Hb_000334_250 0.1184922254 - - Polygalacturonase precursor, putative [Ricinus communis]
18 Hb_031340_030 0.1200325484 - - PREDICTED: L-type lectin-domain containing receptor kinase IV.1 [Jatropha curcas]
19 Hb_006153_200 0.1202170674 - - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [Theobroma cacao]
20 Hb_000472_030 0.1255299982 - - -

Gene co-expression network

sample Hb_000141_230 Hb_000141_230 Hb_003462_150 Hb_003462_150 Hb_000141_230--Hb_003462_150 Hb_004544_080 Hb_004544_080 Hb_000141_230--Hb_004544_080 Hb_000608_080 Hb_000608_080 Hb_000141_230--Hb_000608_080 Hb_000302_060 Hb_000302_060 Hb_000141_230--Hb_000302_060 Hb_002999_090 Hb_002999_090 Hb_000141_230--Hb_002999_090 Hb_002556_020 Hb_002556_020 Hb_000141_230--Hb_002556_020 Hb_003462_150--Hb_004544_080 Hb_003462_150--Hb_000608_080 Hb_003462_150--Hb_002999_090 Hb_003462_150--Hb_002556_020 Hb_002475_020 Hb_002475_020 Hb_003462_150--Hb_002475_020 Hb_004544_080--Hb_000608_080 Hb_004544_080--Hb_002999_090 Hb_004544_080--Hb_002556_020 Hb_004544_080--Hb_002475_020 Hb_000608_080--Hb_000302_060 Hb_009515_010 Hb_009515_010 Hb_000608_080--Hb_009515_010 Hb_000608_080--Hb_002999_090 Hb_002204_030 Hb_002204_030 Hb_000302_060--Hb_002204_030 Hb_000302_060--Hb_009515_010 Hb_000302_060--Hb_002556_020 Hb_000951_030 Hb_000951_030 Hb_000302_060--Hb_000951_030 Hb_000302_060--Hb_002475_020 Hb_002999_090--Hb_002556_020 Hb_001901_010 Hb_001901_010 Hb_002999_090--Hb_001901_010 Hb_002999_090--Hb_002475_020 Hb_002556_020--Hb_000951_030 Hb_002556_020--Hb_002475_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.421317 0 0.343668 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.62872 0

CAGE analysis