Hb_002556_020

Information

Type -
Description -
Location Contig2556: 28780-29841
Sequence    

Annotation

kegg
ID rcu:RCOM_0338900
description Rhicadhesin receptor precursor, putative (EC:1.2.3.4)
nr
ID KDP32127.1
description hypothetical protein JCGZ_12588 [Jatropha curcas]
swissprot
ID P92996
description Germin-like protein subfamily 1 member 20 OS=Arabidopsis thaliana GN=GLP5A PE=1 SV=1
trembl
ID A0A067K7M9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12588 PE=4 SV=1
Gene Ontology
ID GO:0005576
description germin-like protein subfamily 1 member 14

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002556_020 0.0 - - hypothetical protein JCGZ_12588 [Jatropha curcas]
2 Hb_000951_030 0.0430512987 - - kinase, putative [Ricinus communis]
3 Hb_002999_090 0.050441787 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002475_020 0.0534188462 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 isoform X1 [Populus euphratica]
5 Hb_000302_060 0.0566246221 - - unnamed protein product [Vitis vinifera]
6 Hb_000141_230 0.0592535265 - - PREDICTED: 14 kDa proline-rich protein DC2.15-like [Camelina sativa]
7 Hb_003462_150 0.0690179099 - - PREDICTED: chitinase 1-like [Eucalyptus grandis]
8 Hb_004544_080 0.0734808671 - - lectin protein kinase [Populus trichocarpa]
9 Hb_002204_030 0.0791176367 - - PREDICTED: uncharacterized protein LOC105764710 isoform X3 [Gossypium raimondii]
10 Hb_122574_020 0.090876229 - - hypothetical protein JCGZ_24076 [Jatropha curcas]
11 Hb_000608_080 0.0949023712 - - hypothetical protein JCGZ_22216 [Jatropha curcas]
12 Hb_009515_010 0.0976098511 transcription factor TF Family: HB hypothetical protein JCGZ_15302 [Jatropha curcas]
13 Hb_005218_070 0.1019370287 transcription factor TF Family: MYB PREDICTED: transcription factor RAX3 isoform X2 [Populus euphratica]
14 Hb_002081_040 0.1050872378 - - PREDICTED: nucleobase-ascorbate transporter 4 [Jatropha curcas]
15 Hb_001901_010 0.1080137934 - - PREDICTED: alpha carbonic anhydrase 7-like [Jatropha curcas]
16 Hb_005228_170 0.1152367843 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
17 Hb_011856_010 0.1223675038 - - cytochrome P450, putative [Ricinus communis]
18 Hb_161393_010 0.124044382 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
19 Hb_031340_030 0.1244835791 - - PREDICTED: L-type lectin-domain containing receptor kinase IV.1 [Jatropha curcas]
20 Hb_139460_010 0.1255840078 - - PREDICTED: beta-glucosidase 18-like [Jatropha curcas]

Gene co-expression network

sample Hb_002556_020 Hb_002556_020 Hb_000951_030 Hb_000951_030 Hb_002556_020--Hb_000951_030 Hb_002999_090 Hb_002999_090 Hb_002556_020--Hb_002999_090 Hb_002475_020 Hb_002475_020 Hb_002556_020--Hb_002475_020 Hb_000302_060 Hb_000302_060 Hb_002556_020--Hb_000302_060 Hb_000141_230 Hb_000141_230 Hb_002556_020--Hb_000141_230 Hb_003462_150 Hb_003462_150 Hb_002556_020--Hb_003462_150 Hb_000951_030--Hb_000302_060 Hb_122574_020 Hb_122574_020 Hb_000951_030--Hb_122574_020 Hb_002204_030 Hb_002204_030 Hb_000951_030--Hb_002204_030 Hb_000951_030--Hb_002475_020 Hb_005218_070 Hb_005218_070 Hb_000951_030--Hb_005218_070 Hb_002999_090--Hb_003462_150 Hb_004544_080 Hb_004544_080 Hb_002999_090--Hb_004544_080 Hb_002999_090--Hb_000141_230 Hb_001901_010 Hb_001901_010 Hb_002999_090--Hb_001901_010 Hb_002999_090--Hb_002475_020 Hb_002475_020--Hb_000141_230 Hb_002475_020--Hb_000302_060 Hb_002475_020--Hb_003462_150 Hb_002475_020--Hb_004544_080 Hb_000302_060--Hb_002204_030 Hb_009515_010 Hb_009515_010 Hb_000302_060--Hb_009515_010 Hb_000302_060--Hb_000141_230 Hb_000141_230--Hb_003462_150 Hb_000141_230--Hb_004544_080 Hb_000608_080 Hb_000608_080 Hb_000141_230--Hb_000608_080 Hb_003462_150--Hb_004544_080 Hb_003462_150--Hb_000608_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 6.72759 0 3.64813 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 26.7296 0

CAGE analysis