Hb_005218_070

Information

Type transcription factor
Description TF Family: MYB
Location Contig5218: 55719-57089
Sequence    

Annotation

kegg
ID rcu:RCOM_0859200
description r2r3-myb transcription factor, putative
nr
ID XP_011031333.1
description PREDICTED: transcription factor RAX3 isoform X2 [Populus euphratica]
swissprot
ID Q9M2Y9
description Transcription factor RAX3 OS=Arabidopsis thaliana GN=RAX3 PE=2 SV=1
trembl
ID B9SX81
description R2r3-myb transcription factor, putative OS=Ricinus communis GN=RCOM_0859200 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor rax3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005218_070 0.0 transcription factor TF Family: MYB PREDICTED: transcription factor RAX3 isoform X2 [Populus euphratica]
2 Hb_002204_030 0.0708681117 - - PREDICTED: uncharacterized protein LOC105764710 isoform X3 [Gossypium raimondii]
3 Hb_005228_170 0.0717605223 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
4 Hb_000302_060 0.0763667412 - - unnamed protein product [Vitis vinifera]
5 Hb_002475_020 0.0776505153 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 isoform X1 [Populus euphratica]
6 Hb_009515_010 0.0798096951 transcription factor TF Family: HB hypothetical protein JCGZ_15302 [Jatropha curcas]
7 Hb_002671_110 0.0845706949 - - PREDICTED: remorin-like [Jatropha curcas]
8 Hb_002081_040 0.0898704068 - - PREDICTED: nucleobase-ascorbate transporter 4 [Jatropha curcas]
9 Hb_000951_030 0.0916713042 - - kinase, putative [Ricinus communis]
10 Hb_000334_250 0.0933256832 - - Polygalacturonase precursor, putative [Ricinus communis]
11 Hb_161393_010 0.1014480403 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_002556_020 0.1019370287 - - hypothetical protein JCGZ_12588 [Jatropha curcas]
13 Hb_166813_010 0.1053707197 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
14 Hb_000141_230 0.1114898746 - - PREDICTED: 14 kDa proline-rich protein DC2.15-like [Camelina sativa]
15 Hb_059162_010 0.1166835234 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_047163_010 0.1208695988 - - PREDICTED: periaxin-like [Populus euphratica]
17 Hb_000608_080 0.122181362 - - hypothetical protein JCGZ_22216 [Jatropha curcas]
18 Hb_005653_020 0.1232045631 transcription factor TF Family: C2H2 TRANSPARENT TESTA 1 protein, putative [Ricinus communis]
19 Hb_000057_010 0.1241781019 - - PREDICTED: probable protein phosphatase 2C 59 [Jatropha curcas]
20 Hb_003462_150 0.1267302305 - - PREDICTED: chitinase 1-like [Eucalyptus grandis]

Gene co-expression network

sample Hb_005218_070 Hb_005218_070 Hb_002204_030 Hb_002204_030 Hb_005218_070--Hb_002204_030 Hb_005228_170 Hb_005228_170 Hb_005218_070--Hb_005228_170 Hb_000302_060 Hb_000302_060 Hb_005218_070--Hb_000302_060 Hb_002475_020 Hb_002475_020 Hb_005218_070--Hb_002475_020 Hb_009515_010 Hb_009515_010 Hb_005218_070--Hb_009515_010 Hb_002671_110 Hb_002671_110 Hb_005218_070--Hb_002671_110 Hb_002204_030--Hb_009515_010 Hb_002204_030--Hb_000302_060 Hb_000334_250 Hb_000334_250 Hb_002204_030--Hb_000334_250 Hb_000951_030 Hb_000951_030 Hb_002204_030--Hb_000951_030 Hb_002556_020 Hb_002556_020 Hb_002204_030--Hb_002556_020 Hb_002081_040 Hb_002081_040 Hb_005228_170--Hb_002081_040 Hb_005228_170--Hb_002671_110 Hb_005228_170--Hb_000302_060 Hb_161393_010 Hb_161393_010 Hb_005228_170--Hb_161393_010 Hb_005228_170--Hb_002204_030 Hb_000302_060--Hb_009515_010 Hb_000141_230 Hb_000141_230 Hb_000302_060--Hb_000141_230 Hb_000302_060--Hb_002556_020 Hb_000302_060--Hb_000951_030 Hb_000302_060--Hb_002475_020 Hb_002475_020--Hb_002556_020 Hb_002475_020--Hb_000141_230 Hb_002999_090 Hb_002999_090 Hb_002475_020--Hb_002999_090 Hb_003462_150 Hb_003462_150 Hb_002475_020--Hb_003462_150 Hb_004544_080 Hb_004544_080 Hb_002475_020--Hb_004544_080 Hb_009515_010--Hb_000334_250 Hb_000608_080 Hb_000608_080 Hb_009515_010--Hb_000608_080 Hb_009515_010--Hb_000141_230 Hb_000238_060 Hb_000238_060 Hb_002671_110--Hb_000238_060 Hb_000237_150 Hb_000237_150 Hb_002671_110--Hb_000237_150 Hb_001405_100 Hb_001405_100 Hb_002671_110--Hb_001405_100 Hb_002671_110--Hb_002081_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.4366 0.0561154 0.585828 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 3.69964 0

CAGE analysis