Hb_002081_040

Information

Type -
Description -
Location Contig2081: 63585-69966
Sequence    

Annotation

kegg
ID tcc:TCM_007245
description Xanthine/uracil permease family protein isoform 1
nr
ID XP_012093142.1
description PREDICTED: nucleobase-ascorbate transporter 4 [Jatropha curcas]
swissprot
ID P93039
description Nucleobase-ascorbate transporter 4 OS=Arabidopsis thaliana GN=NAT4 PE=2 SV=2
trembl
ID A0A061E884
description Xanthine/uracil permease family protein isoform 1 OS=Theobroma cacao GN=TCM_007245 PE=4 SV=1
Gene Ontology
ID GO:0016020
description nucleobase-ascorbate transporter 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21550: 68764-69414
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002081_040 0.0 - - PREDICTED: nucleobase-ascorbate transporter 4 [Jatropha curcas]
2 Hb_161393_010 0.048685584 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
3 Hb_005228_170 0.0609494172 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
4 Hb_001621_140 0.0863294588 - - PREDICTED: glycerol-3-phosphate acyltransferase 5 [Jatropha curcas]
5 Hb_005653_020 0.0878982482 transcription factor TF Family: C2H2 TRANSPARENT TESTA 1 protein, putative [Ricinus communis]
6 Hb_005218_070 0.0898704068 transcription factor TF Family: MYB PREDICTED: transcription factor RAX3 isoform X2 [Populus euphratica]
7 Hb_000951_030 0.092874325 - - kinase, putative [Ricinus communis]
8 Hb_002671_110 0.0949650012 - - PREDICTED: remorin-like [Jatropha curcas]
9 Hb_002204_030 0.0989689139 - - PREDICTED: uncharacterized protein LOC105764710 isoform X3 [Gossypium raimondii]
10 Hb_002553_120 0.0991686101 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 1B [Jatropha curcas]
11 Hb_000302_060 0.0994290249 - - unnamed protein product [Vitis vinifera]
12 Hb_002475_020 0.1008094223 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 isoform X1 [Populus euphratica]
13 Hb_002556_020 0.1050872378 - - hypothetical protein JCGZ_12588 [Jatropha curcas]
14 Hb_041769_010 0.1114734732 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
15 Hb_006446_060 0.1115514721 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Populus euphratica]
16 Hb_009515_010 0.1131754199 transcription factor TF Family: HB hypothetical protein JCGZ_15302 [Jatropha curcas]
17 Hb_000081_020 0.1150219172 - - PREDICTED: protein NRT1/ PTR FAMILY 1.1-like [Camelina sativa]
18 Hb_000539_080 0.1155215371 - - hypothetical protein POPTR_0039s00260g, partial [Populus trichocarpa]
19 Hb_001693_020 0.1228140463 - - zinc finger protein, putative [Ricinus communis]
20 Hb_031340_030 0.1251698034 - - PREDICTED: L-type lectin-domain containing receptor kinase IV.1 [Jatropha curcas]

Gene co-expression network

sample Hb_002081_040 Hb_002081_040 Hb_161393_010 Hb_161393_010 Hb_002081_040--Hb_161393_010 Hb_005228_170 Hb_005228_170 Hb_002081_040--Hb_005228_170 Hb_001621_140 Hb_001621_140 Hb_002081_040--Hb_001621_140 Hb_005653_020 Hb_005653_020 Hb_002081_040--Hb_005653_020 Hb_005218_070 Hb_005218_070 Hb_002081_040--Hb_005218_070 Hb_000951_030 Hb_000951_030 Hb_002081_040--Hb_000951_030 Hb_161393_010--Hb_001621_140 Hb_041769_010 Hb_041769_010 Hb_161393_010--Hb_041769_010 Hb_006446_060 Hb_006446_060 Hb_161393_010--Hb_006446_060 Hb_161393_010--Hb_005653_020 Hb_002553_120 Hb_002553_120 Hb_161393_010--Hb_002553_120 Hb_002671_110 Hb_002671_110 Hb_005228_170--Hb_002671_110 Hb_005228_170--Hb_005218_070 Hb_000302_060 Hb_000302_060 Hb_005228_170--Hb_000302_060 Hb_005228_170--Hb_161393_010 Hb_002204_030 Hb_002204_030 Hb_005228_170--Hb_002204_030 Hb_001621_140--Hb_006446_060 Hb_001621_140--Hb_005653_020 Hb_001621_140--Hb_041769_010 Hb_003074_070 Hb_003074_070 Hb_001621_140--Hb_003074_070 Hb_005653_020--Hb_006446_060 Hb_005653_020--Hb_002553_120 Hb_005653_020--Hb_041769_010 Hb_005218_070--Hb_002204_030 Hb_005218_070--Hb_000302_060 Hb_002475_020 Hb_002475_020 Hb_005218_070--Hb_002475_020 Hb_009515_010 Hb_009515_010 Hb_005218_070--Hb_009515_010 Hb_005218_070--Hb_002671_110 Hb_002556_020 Hb_002556_020 Hb_000951_030--Hb_002556_020 Hb_000951_030--Hb_000302_060 Hb_122574_020 Hb_122574_020 Hb_000951_030--Hb_122574_020 Hb_000951_030--Hb_002204_030 Hb_000951_030--Hb_002475_020 Hb_000951_030--Hb_005218_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.31306 0.0525904 1.20347 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 9.61163 0.171599

CAGE analysis