Hb_001621_140

Information

Type -
Description -
Location Contig1621: 191118-192892
Sequence    

Annotation

kegg
ID pop:POPTR_0010s20880g
description POPTRDRAFT_805502; hypothetical protein
nr
ID XP_012088851.1
description PREDICTED: glycerol-3-phosphate acyltransferase 5 [Jatropha curcas]
swissprot
ID Q9CAY3
description Glycerol-3-phosphate acyltransferase 5 OS=Arabidopsis thaliana GN=GPAT5 PE=1 SV=1
trembl
ID A0A067L934
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01427 PE=4 SV=1
Gene Ontology
ID GO:0004366
description glycerol-3-phosphate acyltransferase 5-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001621_140 0.0 - - PREDICTED: glycerol-3-phosphate acyltransferase 5 [Jatropha curcas]
2 Hb_006446_060 0.0620049842 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Populus euphratica]
3 Hb_161393_010 0.0635646512 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_005653_020 0.0638134628 transcription factor TF Family: C2H2 TRANSPARENT TESTA 1 protein, putative [Ricinus communis]
5 Hb_041769_010 0.0721497664 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
6 Hb_002081_040 0.0863294588 - - PREDICTED: nucleobase-ascorbate transporter 4 [Jatropha curcas]
7 Hb_003074_070 0.0953393745 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
8 Hb_005731_080 0.0963386845 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
9 Hb_005993_070 0.0974574166 - - lipid binding protein, putative [Ricinus communis]
10 Hb_002553_120 0.0994297232 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 1B [Jatropha curcas]
11 Hb_004185_040 0.1005690603 - - polygalacturonase, putative [Ricinus communis]
12 Hb_000101_050 0.1009013928 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
13 Hb_059162_010 0.1039377028 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
14 Hb_000522_040 0.1054986594 - - Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis]
15 Hb_004195_040 0.1055528951 - - salicylic acid methyl transferase [Capsicum annuum]
16 Hb_002743_030 0.1064066867 transcription factor TF Family: MYB PREDICTED: transcription factor RAX2 [Populus euphratica]
17 Hb_001902_180 0.107168475 - - PREDICTED: uncharacterized protein LOC105129658 [Populus euphratica]
18 Hb_122574_020 0.1075680871 - - hypothetical protein JCGZ_24076 [Jatropha curcas]
19 Hb_047163_010 0.1093250033 - - PREDICTED: periaxin-like [Populus euphratica]
20 Hb_004109_300 0.1122400937 - - hypothetical protein POPTR_0003s21800g [Populus trichocarpa]

Gene co-expression network

sample Hb_001621_140 Hb_001621_140 Hb_006446_060 Hb_006446_060 Hb_001621_140--Hb_006446_060 Hb_161393_010 Hb_161393_010 Hb_001621_140--Hb_161393_010 Hb_005653_020 Hb_005653_020 Hb_001621_140--Hb_005653_020 Hb_041769_010 Hb_041769_010 Hb_001621_140--Hb_041769_010 Hb_002081_040 Hb_002081_040 Hb_001621_140--Hb_002081_040 Hb_003074_070 Hb_003074_070 Hb_001621_140--Hb_003074_070 Hb_000101_050 Hb_000101_050 Hb_006446_060--Hb_000101_050 Hb_006446_060--Hb_041769_010 Hb_005993_070 Hb_005993_070 Hb_006446_060--Hb_005993_070 Hb_006446_060--Hb_161393_010 Hb_006446_060--Hb_005653_020 Hb_161393_010--Hb_002081_040 Hb_161393_010--Hb_041769_010 Hb_161393_010--Hb_005653_020 Hb_002553_120 Hb_002553_120 Hb_161393_010--Hb_002553_120 Hb_005653_020--Hb_002553_120 Hb_005653_020--Hb_002081_040 Hb_005653_020--Hb_041769_010 Hb_041769_010--Hb_000101_050 Hb_059162_010 Hb_059162_010 Hb_041769_010--Hb_059162_010 Hb_004185_040 Hb_004185_040 Hb_041769_010--Hb_004185_040 Hb_005228_170 Hb_005228_170 Hb_002081_040--Hb_005228_170 Hb_005218_070 Hb_005218_070 Hb_002081_040--Hb_005218_070 Hb_000951_030 Hb_000951_030 Hb_002081_040--Hb_000951_030 Hb_002743_030 Hb_002743_030 Hb_003074_070--Hb_002743_030 Hb_122574_020 Hb_122574_020 Hb_003074_070--Hb_122574_020 Hb_004195_040 Hb_004195_040 Hb_003074_070--Hb_004195_040 Hb_012019_030 Hb_012019_030 Hb_003074_070--Hb_012019_030 Hb_004109_300 Hb_004109_300 Hb_003074_070--Hb_004109_300 Hb_003074_070--Hb_000951_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0127389 1.87324 0.0284194 0.305436 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 5.63314 0.0957219

CAGE analysis