Hb_005653_020

Information

Type transcription factor
Description TF Family: C2H2
Location Contig5653: 34635-38005
Sequence    

Annotation

kegg
ID rcu:RCOM_1280320
description TRANSPARENT TESTA 1 protein, putative
nr
ID XP_002523788.1
description TRANSPARENT TESTA 1 protein, putative [Ricinus communis]
swissprot
ID Q9SGD1
description Zinc finger protein WIP3 OS=Arabidopsis thaliana GN=WIP3 PE=2 SV=1
trembl
ID B9SCR9
description TRANSPARENT TESTA 1 protein, putative OS=Ricinus communis GN=RCOM_1280320 PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein transparent testa 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48996: 35721-36199
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005653_020 0.0 transcription factor TF Family: C2H2 TRANSPARENT TESTA 1 protein, putative [Ricinus communis]
2 Hb_001621_140 0.0638134628 - - PREDICTED: glycerol-3-phosphate acyltransferase 5 [Jatropha curcas]
3 Hb_161393_010 0.076424978 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_006446_060 0.0780129803 - - PREDICTED: probably inactive leucine-rich repeat receptor-like protein kinase At5g48380 isoform X1 [Populus euphratica]
5 Hb_002553_120 0.0817187913 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 1B [Jatropha curcas]
6 Hb_002081_040 0.0878982482 - - PREDICTED: nucleobase-ascorbate transporter 4 [Jatropha curcas]
7 Hb_041769_010 0.094989294 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
8 Hb_004109_300 0.0957117048 - - hypothetical protein POPTR_0003s21800g [Populus trichocarpa]
9 Hb_047163_010 0.098078369 - - PREDICTED: periaxin-like [Populus euphratica]
10 Hb_059162_010 0.1002924248 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
11 Hb_000522_040 0.1114191787 - - Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis]
12 Hb_002007_230 0.1130346853 - - PREDICTED: probable linoleate 9S-lipoxygenase 5 [Jatropha curcas]
13 Hb_003074_070 0.1140615962 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
14 Hb_000101_050 0.1149862113 - - Metalloendoproteinase 1 precursor, putative [Ricinus communis]
15 Hb_005993_070 0.1164849894 - - lipid binding protein, putative [Ricinus communis]
16 Hb_002743_030 0.1168221544 transcription factor TF Family: MYB PREDICTED: transcription factor RAX2 [Populus euphratica]
17 Hb_005731_080 0.1187898232 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
18 Hb_000236_360 0.1194974671 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2 [Prunus mume]
19 Hb_001693_020 0.119770701 - - zinc finger protein, putative [Ricinus communis]
20 Hb_002671_110 0.1212733484 - - PREDICTED: remorin-like [Jatropha curcas]

Gene co-expression network

sample Hb_005653_020 Hb_005653_020 Hb_001621_140 Hb_001621_140 Hb_005653_020--Hb_001621_140 Hb_161393_010 Hb_161393_010 Hb_005653_020--Hb_161393_010 Hb_006446_060 Hb_006446_060 Hb_005653_020--Hb_006446_060 Hb_002553_120 Hb_002553_120 Hb_005653_020--Hb_002553_120 Hb_002081_040 Hb_002081_040 Hb_005653_020--Hb_002081_040 Hb_041769_010 Hb_041769_010 Hb_005653_020--Hb_041769_010 Hb_001621_140--Hb_006446_060 Hb_001621_140--Hb_161393_010 Hb_001621_140--Hb_041769_010 Hb_001621_140--Hb_002081_040 Hb_003074_070 Hb_003074_070 Hb_001621_140--Hb_003074_070 Hb_161393_010--Hb_002081_040 Hb_161393_010--Hb_041769_010 Hb_161393_010--Hb_006446_060 Hb_161393_010--Hb_002553_120 Hb_000101_050 Hb_000101_050 Hb_006446_060--Hb_000101_050 Hb_006446_060--Hb_041769_010 Hb_005993_070 Hb_005993_070 Hb_006446_060--Hb_005993_070 Hb_002553_120--Hb_006446_060 Hb_000684_020 Hb_000684_020 Hb_002553_120--Hb_000684_020 Hb_002553_120--Hb_002081_040 Hb_002553_120--Hb_001621_140 Hb_005228_170 Hb_005228_170 Hb_002081_040--Hb_005228_170 Hb_005218_070 Hb_005218_070 Hb_002081_040--Hb_005218_070 Hb_000951_030 Hb_000951_030 Hb_002081_040--Hb_000951_030 Hb_041769_010--Hb_000101_050 Hb_059162_010 Hb_059162_010 Hb_041769_010--Hb_059162_010 Hb_004185_040 Hb_004185_040 Hb_041769_010--Hb_004185_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.119137 15.8969 0.314621 2.82088 0.0783449 0.0339684
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0428004 0.0403802 38.2696 0.539777

CAGE analysis