Hb_005228_170

Information

Type -
Description -
Location Contig5228: 158609-158899
Sequence    

Annotation

kegg
ID rcu:RCOM_0885330
description lipid binding protein, putative
nr
ID KDP40971.1
description hypothetical protein JCGZ_24970 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KXM6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24970 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005228_170 0.0 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
2 Hb_002081_040 0.0609494172 - - PREDICTED: nucleobase-ascorbate transporter 4 [Jatropha curcas]
3 Hb_002671_110 0.0628747183 - - PREDICTED: remorin-like [Jatropha curcas]
4 Hb_005218_070 0.0717605223 transcription factor TF Family: MYB PREDICTED: transcription factor RAX3 isoform X2 [Populus euphratica]
5 Hb_000302_060 0.0911959897 - - unnamed protein product [Vitis vinifera]
6 Hb_161393_010 0.0918559996 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_002204_030 0.0922317006 - - PREDICTED: uncharacterized protein LOC105764710 isoform X3 [Gossypium raimondii]
8 Hb_002475_020 0.0927411738 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 isoform X1 [Populus euphratica]
9 Hb_009515_010 0.093317198 transcription factor TF Family: HB hypothetical protein JCGZ_15302 [Jatropha curcas]
10 Hb_000238_060 0.0941291809 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
11 Hb_000081_020 0.0942395386 - - PREDICTED: protein NRT1/ PTR FAMILY 1.1-like [Camelina sativa]
12 Hb_001638_110 0.0977348601 - - conserved hypothetical protein [Ricinus communis]
13 Hb_166813_010 0.105406446 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
14 Hb_000334_250 0.107848895 - - Polygalacturonase precursor, putative [Ricinus communis]
15 Hb_000141_230 0.1099924094 - - PREDICTED: 14 kDa proline-rich protein DC2.15-like [Camelina sativa]
16 Hb_000539_080 0.1113142353 - - hypothetical protein POPTR_0039s00260g, partial [Populus trichocarpa]
17 Hb_000608_080 0.1144456965 - - hypothetical protein JCGZ_22216 [Jatropha curcas]
18 Hb_000237_150 0.1146886269 - - Epoxide hydrolase 2 [Morus notabilis]
19 Hb_002556_020 0.1152367843 - - hypothetical protein JCGZ_12588 [Jatropha curcas]
20 Hb_001405_100 0.1159845037 - - PREDICTED: lysM domain receptor-like kinase 4 [Jatropha curcas]

Gene co-expression network

sample Hb_005228_170 Hb_005228_170 Hb_002081_040 Hb_002081_040 Hb_005228_170--Hb_002081_040 Hb_002671_110 Hb_002671_110 Hb_005228_170--Hb_002671_110 Hb_005218_070 Hb_005218_070 Hb_005228_170--Hb_005218_070 Hb_000302_060 Hb_000302_060 Hb_005228_170--Hb_000302_060 Hb_161393_010 Hb_161393_010 Hb_005228_170--Hb_161393_010 Hb_002204_030 Hb_002204_030 Hb_005228_170--Hb_002204_030 Hb_002081_040--Hb_161393_010 Hb_001621_140 Hb_001621_140 Hb_002081_040--Hb_001621_140 Hb_005653_020 Hb_005653_020 Hb_002081_040--Hb_005653_020 Hb_002081_040--Hb_005218_070 Hb_000951_030 Hb_000951_030 Hb_002081_040--Hb_000951_030 Hb_000238_060 Hb_000238_060 Hb_002671_110--Hb_000238_060 Hb_002671_110--Hb_005218_070 Hb_000237_150 Hb_000237_150 Hb_002671_110--Hb_000237_150 Hb_001405_100 Hb_001405_100 Hb_002671_110--Hb_001405_100 Hb_002671_110--Hb_002081_040 Hb_005218_070--Hb_002204_030 Hb_005218_070--Hb_000302_060 Hb_002475_020 Hb_002475_020 Hb_005218_070--Hb_002475_020 Hb_009515_010 Hb_009515_010 Hb_005218_070--Hb_009515_010 Hb_000302_060--Hb_002204_030 Hb_000302_060--Hb_009515_010 Hb_000141_230 Hb_000141_230 Hb_000302_060--Hb_000141_230 Hb_002556_020 Hb_002556_020 Hb_000302_060--Hb_002556_020 Hb_000302_060--Hb_000951_030 Hb_000302_060--Hb_002475_020 Hb_161393_010--Hb_001621_140 Hb_041769_010 Hb_041769_010 Hb_161393_010--Hb_041769_010 Hb_006446_060 Hb_006446_060 Hb_161393_010--Hb_006446_060 Hb_161393_010--Hb_005653_020 Hb_002553_120 Hb_002553_120 Hb_161393_010--Hb_002553_120 Hb_002204_030--Hb_009515_010 Hb_000334_250 Hb_000334_250 Hb_002204_030--Hb_000334_250 Hb_002204_030--Hb_000951_030 Hb_002204_030--Hb_002556_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 13.4722 0.448837 7.07576 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 36.6801 0.483737

CAGE analysis