Hb_002204_030

Information

Type -
Description -
Location Contig2204: 106111-107549
Sequence    

Annotation

kegg
ID sbi:SORBI_10g005070
description SORBIDRAFT_10g005070, Sb10g005070; hypothetical protein
nr
ID XP_012438868.1
description PREDICTED: uncharacterized protein LOC105764710 isoform X3 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2PYA6
description Gossypium raimondii chromosome 8, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_008G198600 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002204_030 0.0 - - PREDICTED: uncharacterized protein LOC105764710 isoform X3 [Gossypium raimondii]
2 Hb_009515_010 0.0266964846 transcription factor TF Family: HB hypothetical protein JCGZ_15302 [Jatropha curcas]
3 Hb_000302_060 0.0278779727 - - unnamed protein product [Vitis vinifera]
4 Hb_000334_250 0.0530341772 - - Polygalacturonase precursor, putative [Ricinus communis]
5 Hb_000951_030 0.069748371 - - kinase, putative [Ricinus communis]
6 Hb_005218_070 0.0708681117 transcription factor TF Family: MYB PREDICTED: transcription factor RAX3 isoform X2 [Populus euphratica]
7 Hb_002556_020 0.0791176367 - - hypothetical protein JCGZ_12588 [Jatropha curcas]
8 Hb_000141_230 0.0829144113 - - PREDICTED: 14 kDa proline-rich protein DC2.15-like [Camelina sativa]
9 Hb_002475_020 0.0914225291 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 isoform X1 [Populus euphratica]
10 Hb_005228_170 0.0922317006 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
11 Hb_000608_080 0.0922367483 - - hypothetical protein JCGZ_22216 [Jatropha curcas]
12 Hb_002081_040 0.0989689139 - - PREDICTED: nucleobase-ascorbate transporter 4 [Jatropha curcas]
13 Hb_003462_150 0.1020142341 - - PREDICTED: chitinase 1-like [Eucalyptus grandis]
14 Hb_004544_080 0.1045380392 - - lectin protein kinase [Populus trichocarpa]
15 Hb_000236_360 0.1133851477 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2 [Prunus mume]
16 Hb_002999_090 0.1191154336 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002671_110 0.1229249779 - - PREDICTED: remorin-like [Jatropha curcas]
18 Hb_000472_030 0.1254140044 - - -
19 Hb_161393_010 0.1302114773 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_166813_010 0.1349759724 - - hypothetical protein JCGZ_24970 [Jatropha curcas]

Gene co-expression network

sample Hb_002204_030 Hb_002204_030 Hb_009515_010 Hb_009515_010 Hb_002204_030--Hb_009515_010 Hb_000302_060 Hb_000302_060 Hb_002204_030--Hb_000302_060 Hb_000334_250 Hb_000334_250 Hb_002204_030--Hb_000334_250 Hb_000951_030 Hb_000951_030 Hb_002204_030--Hb_000951_030 Hb_005218_070 Hb_005218_070 Hb_002204_030--Hb_005218_070 Hb_002556_020 Hb_002556_020 Hb_002204_030--Hb_002556_020 Hb_009515_010--Hb_000334_250 Hb_009515_010--Hb_000302_060 Hb_009515_010--Hb_005218_070 Hb_000608_080 Hb_000608_080 Hb_009515_010--Hb_000608_080 Hb_000141_230 Hb_000141_230 Hb_009515_010--Hb_000141_230 Hb_000302_060--Hb_000141_230 Hb_000302_060--Hb_002556_020 Hb_000302_060--Hb_000951_030 Hb_002475_020 Hb_002475_020 Hb_000302_060--Hb_002475_020 Hb_000334_250--Hb_000302_060 Hb_000334_250--Hb_005218_070 Hb_000472_030 Hb_000472_030 Hb_000334_250--Hb_000472_030 Hb_005228_170 Hb_005228_170 Hb_000334_250--Hb_005228_170 Hb_000951_030--Hb_002556_020 Hb_122574_020 Hb_122574_020 Hb_000951_030--Hb_122574_020 Hb_000951_030--Hb_002475_020 Hb_000951_030--Hb_005218_070 Hb_005218_070--Hb_005228_170 Hb_005218_070--Hb_000302_060 Hb_005218_070--Hb_002475_020 Hb_002671_110 Hb_002671_110 Hb_005218_070--Hb_002671_110 Hb_002999_090 Hb_002999_090 Hb_002556_020--Hb_002999_090 Hb_002556_020--Hb_002475_020 Hb_002556_020--Hb_000141_230 Hb_003462_150 Hb_003462_150 Hb_002556_020--Hb_003462_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0503169 0 0.0221888 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.12739 0

CAGE analysis