Hb_009515_010

Information

Type transcription factor
Description TF Family: HB
Location Contig9515: 5887-6444
Sequence    

Annotation

kegg
ID pop:POPTR_0011s11510g
description POPTRDRAFT_235760; hypothetical protein
nr
ID KDP45858.1
description hypothetical protein JCGZ_15302 [Jatropha curcas]
swissprot
ID Q9FN29
description Homeobox-leucine zipper protein ATHB-52 OS=Arabidopsis thaliana GN=ATHB-52 PE=2 SV=1
trembl
ID A0A067LF56
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15302 PE=4 SV=1
Gene Ontology
ID GO:0005634
description homeobox-leucine zipper protein athb-52-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63434: 5969-6286
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009515_010 0.0 transcription factor TF Family: HB hypothetical protein JCGZ_15302 [Jatropha curcas]
2 Hb_002204_030 0.0266964846 - - PREDICTED: uncharacterized protein LOC105764710 isoform X3 [Gossypium raimondii]
3 Hb_000334_250 0.034971651 - - Polygalacturonase precursor, putative [Ricinus communis]
4 Hb_000302_060 0.0411324941 - - unnamed protein product [Vitis vinifera]
5 Hb_005218_070 0.0798096951 transcription factor TF Family: MYB PREDICTED: transcription factor RAX3 isoform X2 [Populus euphratica]
6 Hb_000608_080 0.0824578883 - - hypothetical protein JCGZ_22216 [Jatropha curcas]
7 Hb_000141_230 0.0846079745 - - PREDICTED: 14 kDa proline-rich protein DC2.15-like [Camelina sativa]
8 Hb_005228_170 0.093317198 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
9 Hb_000951_030 0.0951761856 - - kinase, putative [Ricinus communis]
10 Hb_002556_020 0.0976098511 - - hypothetical protein JCGZ_12588 [Jatropha curcas]
11 Hb_000472_030 0.0999814087 - - -
12 Hb_003462_150 0.103061479 - - PREDICTED: chitinase 1-like [Eucalyptus grandis]
13 Hb_002475_020 0.1036946632 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 isoform X1 [Populus euphratica]
14 Hb_004544_080 0.1045533044 - - lectin protein kinase [Populus trichocarpa]
15 Hb_002081_040 0.1131754199 - - PREDICTED: nucleobase-ascorbate transporter 4 [Jatropha curcas]
16 Hb_002622_020 0.1140355868 - - -
17 Hb_002671_110 0.1242303649 - - PREDICTED: remorin-like [Jatropha curcas]
18 Hb_012762_070 0.1260588236 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HOX3 [Jatropha curcas]
19 Hb_000236_360 0.1263496003 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase FLS2 [Prunus mume]
20 Hb_002999_090 0.1303547421 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_009515_010 Hb_009515_010 Hb_002204_030 Hb_002204_030 Hb_009515_010--Hb_002204_030 Hb_000334_250 Hb_000334_250 Hb_009515_010--Hb_000334_250 Hb_000302_060 Hb_000302_060 Hb_009515_010--Hb_000302_060 Hb_005218_070 Hb_005218_070 Hb_009515_010--Hb_005218_070 Hb_000608_080 Hb_000608_080 Hb_009515_010--Hb_000608_080 Hb_000141_230 Hb_000141_230 Hb_009515_010--Hb_000141_230 Hb_002204_030--Hb_000302_060 Hb_002204_030--Hb_000334_250 Hb_000951_030 Hb_000951_030 Hb_002204_030--Hb_000951_030 Hb_002204_030--Hb_005218_070 Hb_002556_020 Hb_002556_020 Hb_002204_030--Hb_002556_020 Hb_000334_250--Hb_000302_060 Hb_000334_250--Hb_005218_070 Hb_000472_030 Hb_000472_030 Hb_000334_250--Hb_000472_030 Hb_005228_170 Hb_005228_170 Hb_000334_250--Hb_005228_170 Hb_000302_060--Hb_000141_230 Hb_000302_060--Hb_002556_020 Hb_000302_060--Hb_000951_030 Hb_002475_020 Hb_002475_020 Hb_000302_060--Hb_002475_020 Hb_005218_070--Hb_005228_170 Hb_005218_070--Hb_000302_060 Hb_005218_070--Hb_002475_020 Hb_002671_110 Hb_002671_110 Hb_005218_070--Hb_002671_110 Hb_000608_080--Hb_000141_230 Hb_004544_080 Hb_004544_080 Hb_000608_080--Hb_004544_080 Hb_003462_150 Hb_003462_150 Hb_000608_080--Hb_003462_150 Hb_000608_080--Hb_000302_060 Hb_002999_090 Hb_002999_090 Hb_000608_080--Hb_002999_090 Hb_000141_230--Hb_003462_150 Hb_000141_230--Hb_004544_080 Hb_000141_230--Hb_002999_090 Hb_000141_230--Hb_002556_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.322646 0 0.161903 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.766331 0

CAGE analysis