Hb_000472_030

Information

Type -
Description -
Location Contig472: 64385-67953
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000472_030 0.0 - - -
2 Hb_002622_020 0.0142966693 - - -
3 Hb_012762_070 0.0637686251 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HOX3 [Jatropha curcas]
4 Hb_000608_080 0.0915659063 - - hypothetical protein JCGZ_22216 [Jatropha curcas]
5 Hb_005056_030 0.0976079738 - - DUF26 domain-containing protein 2 precursor, putative [Ricinus communis]
6 Hb_000334_250 0.0995895622 - - Polygalacturonase precursor, putative [Ricinus communis]
7 Hb_009515_010 0.0999814087 transcription factor TF Family: HB hypothetical protein JCGZ_15302 [Jatropha curcas]
8 Hb_007850_040 0.1015853748 - - conserved hypothetical protein [Ricinus communis]
9 Hb_006268_010 0.1017253349 - - hypothetical protein EUGRSUZ_B00966 [Eucalyptus grandis]
10 Hb_002204_030 0.1254140044 - - PREDICTED: uncharacterized protein LOC105764710 isoform X3 [Gossypium raimondii]
11 Hb_000141_230 0.1255299982 - - PREDICTED: 14 kDa proline-rich protein DC2.15-like [Camelina sativa]
12 Hb_000302_060 0.125697814 - - unnamed protein product [Vitis vinifera]
13 Hb_004544_080 0.1313346611 - - lectin protein kinase [Populus trichocarpa]
14 Hb_003462_150 0.1335066056 - - PREDICTED: chitinase 1-like [Eucalyptus grandis]
15 Hb_166813_010 0.142341252 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
16 Hb_000761_030 0.1424041863 transcription factor TF Family: ERF Transcriptional factor TINY, putative [Ricinus communis]
17 Hb_005228_170 0.1439639148 - - hypothetical protein JCGZ_24970 [Jatropha curcas]
18 Hb_001638_110 0.1445874057 - - conserved hypothetical protein [Ricinus communis]
19 Hb_001283_010 0.1480641466 transcription factor TF Family: LOB LOB domain-containing protein 15 [Populus tremula x Populus tremuloides]
20 Hb_000487_140 0.1493755379 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000472_030 Hb_000472_030 Hb_002622_020 Hb_002622_020 Hb_000472_030--Hb_002622_020 Hb_012762_070 Hb_012762_070 Hb_000472_030--Hb_012762_070 Hb_000608_080 Hb_000608_080 Hb_000472_030--Hb_000608_080 Hb_005056_030 Hb_005056_030 Hb_000472_030--Hb_005056_030 Hb_000334_250 Hb_000334_250 Hb_000472_030--Hb_000334_250 Hb_009515_010 Hb_009515_010 Hb_000472_030--Hb_009515_010 Hb_002622_020--Hb_012762_070 Hb_002622_020--Hb_005056_030 Hb_006268_010 Hb_006268_010 Hb_002622_020--Hb_006268_010 Hb_007850_040 Hb_007850_040 Hb_002622_020--Hb_007850_040 Hb_002622_020--Hb_000608_080 Hb_012762_070--Hb_005056_030 Hb_012762_070--Hb_000608_080 Hb_166813_010 Hb_166813_010 Hb_012762_070--Hb_166813_010 Hb_012762_070--Hb_006268_010 Hb_000141_230 Hb_000141_230 Hb_000608_080--Hb_000141_230 Hb_004544_080 Hb_004544_080 Hb_000608_080--Hb_004544_080 Hb_003462_150 Hb_003462_150 Hb_000608_080--Hb_003462_150 Hb_000302_060 Hb_000302_060 Hb_000608_080--Hb_000302_060 Hb_000608_080--Hb_009515_010 Hb_002999_090 Hb_002999_090 Hb_000608_080--Hb_002999_090 Hb_005056_030--Hb_006268_010 Hb_046191_010 Hb_046191_010 Hb_005056_030--Hb_046191_010 Hb_000761_030 Hb_000761_030 Hb_005056_030--Hb_000761_030 Hb_000334_250--Hb_009515_010 Hb_002204_030 Hb_002204_030 Hb_000334_250--Hb_002204_030 Hb_000334_250--Hb_000302_060 Hb_005218_070 Hb_005218_070 Hb_000334_250--Hb_005218_070 Hb_005228_170 Hb_005228_170 Hb_000334_250--Hb_005228_170 Hb_009515_010--Hb_002204_030 Hb_009515_010--Hb_000302_060 Hb_009515_010--Hb_005218_070 Hb_009515_010--Hb_000141_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0362212 0 0.0319853 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0790929 0

CAGE analysis